CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92569
EES04513

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	EES04513	AT2G20580.1	21798944
AT3G02540.1	EER92569	AT4G38630.1	20059542
AT5G38470.1	EER92569	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005732_P001	Maize	cytosol	79.65	71.24
TraesCS5B01G204000.1	Wheat	cytosol	68.59	69.11
Os09t0407200-01	Rice	cytosol	67.84	68.88
TraesCS5A01G204200.1	Wheat	cytosol	68.09	68.61
TraesCS5D01G211900.1	Wheat	cytosol	68.09	68.61
HORVU5Hr1G060920.1	Barley	mitochondrion	70.1	64.43
GSMUA_Achr9P15580_001	Banana	cytosol	35.68	64.25
CDY01661	Canola	cytosol	58.54	61.64
Solyc02g063130.2.1	Tomato	cytosol, extracellular	59.3	61.62
Bra028184.1-P	Field mustard	cytosol	58.29	61.38
PGSC0003DMT400062159	Potato	cytosol	59.3	61.14
CDX74522	Canola	cytosol	57.79	60.53
PGSC0003DMT400032941	Potato	cytosol	59.3	60.51
VIT_01s0011g03410.t01	Wine grape	cytosol	60.3	60.45
CDY58121	Canola	cytosol	58.29	60.42
GSMUA_Achr5P05860_001	Banana	cytosol	59.3	60.2
Solyc02g085840.2.1	Tomato	cytosol	58.79	60.15
Bra028408.1-P	Field mustard	cytosol	57.54	59.95
VIT_14s0006g03040.t01	Wine grape	cytosol	57.29	59.84
AT5G38470.1	Thale cress	cytosol	56.78	59.79
KRH45279	Soybean	cytosol	60.05	59.6
KRH75377	Soybean	cytosol, nucleus	58.54	59.44
KRG90804	Soybean	cytosol	59.3	58.71
CDX67404	Canola	cytosol	56.28	58.64
GSMUA_Achr3P07380_001	Banana	cytosol	59.8	58.19
KRH35965	Soybean	cytosol	59.05	57.6
Solyc04g007120.2.1	Tomato	cytosol, plastid	58.29	56.72
KXG19738	Sorghum	cytosol	57.04	55.64
CDX91998	Canola	cytosol	55.78	55.09
CDX74251	Canola	cytosol	54.77	54.36
AT3G02540.1	Thale cress	cytosol	57.04	54.18
Bra001050.1-P	Field mustard	cytosol	54.27	53.87
KRH01763	Soybean	cytosol	50.25	53.33
AT5G16090.1	Thale cress	cytosol	21.36	49.71
EES04633	Sorghum	cytosol	42.21	45.53
CDY26493	Canola	cytosol	32.16	36.06
Bra008649.1-P	Field mustard	cytosol	29.9	34.59
CDY26494	Canola	nucleus	23.37	34.57
CDX69474	Canola	cytosol	31.41	34.25
CDY26496	Canola	cytosol	28.39	31.48
CDX69472	Canola	cytosol	27.14	30.42
Bra008647.1-P	Field mustard	cytosol	27.14	30.42
CDY26495	Canola	cytosol	11.06	23.16
Bra008648.1-P	Field mustard	cytosol	29.65	18.82
CDX69473	Canola	cytosol	29.9	18.06

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	UniProt:A0A1B6QCE9	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EnsemblPlants:KXG35597	ProteinID:KXG35597
ProteinID:KXG35597.1	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	EnsemblPlantsGene:SORBI_3002G197100	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001C80E6F	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:58647737..58656005

Molecular Weight (calculated)

42370.9 Da

IEP (calculated)

4.035

GRAVY (calculated)

-0.264

Length

398 amino acids

Sequence
(BLAST)

001: MKVSVKTLKG SSFQIEVEPT DKVADVKKVI ESIQENASYP ADQQVLIHQG KVLKDDTTLE ENQVVENNFL VIMLRQYNCN LSQNKGSSSA APAKATANQA
101: PPTQTVPATP TQMSAAPAAP APIVPVSAPA ATATALAAPA VAVSTEADSY GQAASNLVAG SNLEGTIQSI LEMGGGTWDR DTVLRALRAA YNNPERAVEY
201: LYSGIPEQME APAPPPSSQP ANPVQAAQTA QAVVPSSGPN ANPLDLFPQS LPNASANAGA GNLDVLRNNA QFQNLLGLVQ ANPQILQPLL QELGKQNPQV
301: MQLIQENQAE FMRLINEPLE GDEENEMMLD QMADAAETIA VTPEENEAIL RLEGMGFDRA LVLEVFFACN KNEQLAANYL LDHMHEFDND DGLGGPPL

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.