Factsheet for Solyc02g085840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083710.2.1
Solyc03g033430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	Solyc02g083710.2.1	AT4G38630.1	20059542
AT5G38470.1	Solyc03g033430.1.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032941	Potato	cytosol	90.49	90.26
Solyc02g063130.2.1	Tomato	cytosol, extracellular	75.84	77.02
GSMUA_Achr9P15580_001	Banana	cytosol	40.36	71.04
Bra028184.1-P	Field mustard	cytosol	68.38	70.37
AT5G38470.1	Thale cress	cytosol	68.12	70.11
CDY01661	Canola	cytosol	67.87	69.84
Bra028408.1-P	Field mustard	cytosol	68.38	69.63
CDY58121	Canola	cytosol	68.64	69.53
CDX74522	Canola	cytosol	67.61	69.21
CDX67404	Canola	cytosol	67.87	69.11
GSMUA_Achr5P05860_001	Banana	cytosol	67.1	66.58
Solyc04g007120.2.1	Tomato	cytosol, plastid	69.41	66.01
GSMUA_Achr3P07380_001	Banana	cytosol	66.32	63.08
TraesCS7D01G209100.1	Wheat	cytosol	62.98	60.2
TraesCS7B01G113500.1	Wheat	cytosol	62.98	60.2
Os06t0264300-01	Rice	cytosol, nucleus, plastid	63.75	60.05
Zm00001d037326_P001	Maize	cytosol	61.95	59.95
Os02t0465000-00	Rice	cytosol	14.14	59.78
TraesCS5D01G211900.1	Wheat	cytosol	60.41	59.49
KXG19738	Sorghum	cytosol	62.21	59.31
TraesCS7A01G206300.1	Wheat	cytosol	61.95	59.07
TraesCS5B01G204000.1	Wheat	cytosol	59.9	58.99
KXG35597	Sorghum	cytosol	60.15	58.79
TraesCS5A01G204200.1	Wheat	cytosol	59.13	58.23
Os09t0407200-01	Rice	cytosol	58.61	58.16
Zm00001d045665_P003	Maize	cytosol	61.18	58.05
Os08t0430200-01	Rice	cytosol	60.41	57.88
HORVU5Hr1G060920.1	Barley	mitochondrion	61.95	55.66
GSMUA_Achr9P15590_001	Banana	cytosol	20.31	55.63
Solyc03g117780.2.1	Tomato	cytosol	50.13	53.28
HORVU7Hr1G042100.8	Barley	cytosol	55.53	51.43
Zm00001d005732_P001	Maize	cytosol	56.56	49.44
Zm00001d020419_P003	Maize	cytosol	48.59	41.36

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:AJ243875	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8
UniProt:Q9STA6	InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:Solyc02g085840.2	EnsemblPlants:Solyc02g085840.2.1	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00000A3552	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

RAD23 protein [Source:UniProtKB/TrEMBL;Acc:Q9STA6]

Coordinates

chr2:-:48626541..48632149

Molecular Weight (calculated)

41510.7 Da

IEP (calculated)

4.385

GRAVY (calculated)

-0.282

Length

389 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVADVKKNI ESVQGQDVYP AAQQMLIHQG KVLKDTTTLE ENKVAENSFV VIMLSKNKVS STGTSSISAA LSNTAQPDGS
101: TDQARQTITT PQATAALPQS ASESAPTPAP VPAAASSVTD VYDQAASNLV AGSNLETTVQ QILDMGGGSW DRDTVVRALR AAYNNPERAV DYLYSGIPEQ
201: TEIPPVARAP AAPAVTAPAS AQAINPAAQD ASQLAVPSSG PNANPLDLFP QGLTNAGSNA GAGNLDFLRN SPQFQALRAM VQANPQILQP MLQELGKQNP
301: HLMRLIQEHQ PDFLRLINEP VEGEGNVLGQ TAGAIPQAVT VTPEEREAIE RLEAMGFDRA LVLEVYFACN KNEELAANYL LDHLHEFDE

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.