Factsheet for Os09t0407200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0146700-02
Os03t0243300-01
Os06t0699900-01
Os09t0326800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Os02t0146700-02	AT2G20580.1	21798944
AT3G02540.1	Os06t0699900-01	AT2G20580.1	21798944
AT3G02540.1	Os09t0326800-01	AT2G20580.1	21798944
AT3G02540.1	Os03t0243300-01	AT4G38630.1	20059542
AT5G38470.1	Os03t0243300-01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G204200.1	Wheat	cytosol	78.57	77.97
TraesCS5B01G204000.1	Wheat	cytosol	75.26	74.68
TraesCS5D01G211900.1	Wheat	cytosol	74.74	74.18
HORVU5Hr1G060920.1	Barley	mitochondrion	76.02	68.82
KXG35597	Sorghum	cytosol	68.88	67.84
Os08t0430200-01	Rice	cytosol	67.09	64.78
GSMUA_Achr9P15580_001	Banana	cytosol	34.95	61.99
GSMUA_Achr5P05860_001	Banana	cytosol	60.46	60.46
Solyc02g063130.2.1	Tomato	cytosol, extracellular	58.42	59.79
Os02t0465000-00	Rice	cytosol	14.03	59.78
CDY01661	Canola	cytosol	57.14	59.26
Bra028184.1-P	Field mustard	cytosol	56.89	58.99
Zm00001d005732_P001	Maize	cytosol	66.84	58.88
PGSC0003DMT400062159	Potato	cytosol	57.91	58.81
Solyc02g085840.2.1	Tomato	cytosol	58.16	58.61
PGSC0003DMT400032941	Potato	cytosol	57.91	58.21
VIT_01s0011g03410.t01	Wine grape	cytosol	58.67	57.93
GSMUA_Achr3P07380_001	Banana	cytosol	60.2	57.7
CDX74522	Canola	cytosol	55.87	57.63
AT5G38470.1	Thale cress	cytosol	55.36	57.41
CDY58121	Canola	cytosol	55.87	57.03
KRH75377	Soybean	cytosol, nucleus	56.89	56.89
KRH45279	Soybean	cytosol	58.16	56.86
VIT_14s0006g03040.t01	Wine grape	cytosol	55.1	56.69
Bra028408.1-P	Field mustard	cytosol	55.1	56.54
KRG90804	Soybean	cytosol	57.91	56.47
Os06t0264300-01	Rice	cytosol, nucleus, plastid	59.44	56.42
CDX67404	Canola	cytosol	54.85	56.28
CDX74251	Canola	cytosol	57.14	55.86
KRH35965	Soybean	cytosol	57.65	55.39
Bra001050.1-P	Field mustard	cytosol	56.38	55.11
CDX91998	Canola	cytosol	56.12	54.59
Solyc04g007120.2.1	Tomato	cytosol, plastid	56.38	54.03
AT3G02540.1	Thale cress	cytosol	56.89	53.22
KRH01763	Soybean	cytosol	49.74	52.0
AT5G16090.1	Thale cress	cytosol	21.43	49.12
Os02t0179300-01	Rice	plasma membrane	44.64	47.43
Zm00001d020419_P003	Maize	cytosol	54.59	46.83
CDY26493	Canola	cytosol	32.14	35.49
CDX69474	Canola	cytosol	32.4	34.79
Bra008649.1-P	Field mustard	cytosol	30.1	34.3
CDY26494	Canola	nucleus	22.7	33.09
CDY26496	Canola	cytosol	29.59	32.31
CDX69472	Canola	cytosol	28.57	31.55
Bra008647.1-P	Field mustard	cytosol	28.57	31.55
CDY26495	Canola	cytosol	10.97	22.63
Bra008648.1-P	Field mustard	cytosol	29.85	18.66
CDX69473	Canola	cytosol	30.36	18.06

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EntrezGene:4347014	ProteinID:BAD36240.1
ProteinID:BAD36295.1	ProteinID:BAF25048.1	ProteinID:BAT08015.1	ProteinID:EAZ44680.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006289
GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EnsemblPlantsGene:Os09g0407200
EnsemblPlants:Os09t0407200-01	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	UniProt:Q40742	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	EMBL:U63530	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0000403A0B	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	RefSeq:XP_015611791.1	SEG:seg	:

Description

DNA REPAIR PROTEIN RAD23Similar to RAD23, isoform I. (Os09t0407200-01);Similar to DNA repair protein RAD23. (Os09t0407200-02)

Coordinates

chr9:+:14363035..14366942

Molecular Weight (calculated)

41773.2 Da

IEP (calculated)

4.076

GRAVY (calculated)

-0.232

Length

392 amino acids

Sequence
(BLAST)

001: MKISVKTLKG STFQIEVDSA QKVADVKRII ETTQGQHIYP AEQQMLIHQG KVLKDDTTLD ENKVLENSFL VIMLRQGKGS SSSAPATSKA PSNQAPPTQT
101: VPAAPASQAP VAPATTVPVT VSAPTPTATA SPAPAVAVSS EADNYGQATS NLVAGSNLEA TIQSILEMGG GIWDRDIVLH ALSAAFNNPE RAVEYLYSGV
201: PEQMDIPVPP PSIQPANPTQ ASQATQPAAP SILSSGPNAS PLDLFPQALP NASTDAAGLG NLDALRNNAQ FRTLLSLVQA NPQILQPLLQ ELGKQNPQIL
301: QLIQENQAEF LHLINEPAEG DDEENLLDQF PEAMPQTIAV TPEENEAILR LEAMGFDRAL VLDVFFACNK DEQLAANYLL DHMNEFDDEG PP

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.