Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G211900.1 | Wheat | cytosol | 98.48 | 98.48 |
| TraesCS5A01G204200.1 | Wheat | cytosol | 87.09 | 87.09 |
| HORVU5Hr1G060920.1 | Barley | mitochondrion | 89.37 | 81.52 |
| Os09t0407200-01 | Rice | cytosol | 74.68 | 75.26 |
| KXG35597 | Sorghum | cytosol | 69.11 | 68.59 |
| GSMUA_Achr9P15580_001 | Banana | cytosol | 36.46 | 65.16 |
| GSMUA_Achr5P05860_001 | Banana | cytosol | 62.03 | 62.5 |
| Bra028184.1-P | Field mustard | cytosol | 58.23 | 60.85 |
| CDY01661 | Canola | cytosol | 57.97 | 60.58 |
| Bra028408.1-P | Field mustard | cytosol | 57.97 | 59.95 |
| Solyc02g085840.2.1 | Tomato | cytosol | 58.99 | 59.9 |
| CDY58121 | Canola | cytosol | 58.23 | 59.9 |
| Solyc02g063130.2.1 | Tomato | cytosol, extracellular | 57.72 | 59.53 |
| CDX74522 | Canola | cytosol | 57.22 | 59.47 |
| KRH75377 | Soybean | cytosol, nucleus | 58.99 | 59.44 |
| AT5G38470.1 | Thale cress | cytosol | 56.71 | 59.26 |
| PGSC0003DMT400032941 | Potato | cytosol | 58.48 | 59.23 |
| GSMUA_Achr3P07380_001 | Banana | cytosol | 61.27 | 59.17 |
| CDX67404 | Canola | cytosol | 57.22 | 59.16 |
| PGSC0003DMT400062159 | Potato | cytosol | 57.72 | 59.07 |
| VIT_14s0006g03040.t01 | Wine grape | cytosol | 56.2 | 58.27 |
| Zm00001d005732_P001 | Maize | cytosol | 64.56 | 57.3 |
| VIT_01s0011g03410.t01 | Wine grape | cytosol | 57.47 | 57.18 |
| KRH45279 | Soybean | cytosol | 56.96 | 56.11 |
| Solyc04g007120.2.1 | Tomato | cytosol, plastid | 57.72 | 55.75 |
| KRG90804 | Soybean | cytosol | 56.71 | 55.72 |
| CDX74251 | Canola | cytosol | 56.46 | 55.61 |
| KRH35965 | Soybean | cytosol | 57.22 | 55.39 |
| TraesCS7B01G113500.1 | Wheat | cytosol | 56.96 | 55.28 |
| AT3G02540.1 | Thale cress | cytosol | 57.47 | 54.18 |
| KRH01763 | Soybean | cytosol | 51.39 | 54.13 |
| Bra001050.1-P | Field mustard | cytosol | 54.94 | 54.11 |
| CDX91998 | Canola | cytosol | 55.19 | 54.09 |
| AT5G16090.1 | Thale cress | cytosol | 21.27 | 49.12 |
| Zm00001d020419_P003 | Maize | cytosol | 55.44 | 47.92 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 41.27 | 44.41 |
| CDY26493 | Canola | cytosol | 32.66 | 36.34 |
| CDY26494 | Canola | nucleus | 24.3 | 35.69 |
| CDX69474 | Canola | cytosol | 32.66 | 35.34 |
| Bra008649.1-P | Field mustard | cytosol | 30.63 | 35.17 |
| CDX69472 | Canola | cytosol | 28.35 | 31.55 |
| Bra008647.1-P | Field mustard | cytosol | 28.35 | 31.55 |
| CDY26496 | Canola | cytosol | 28.35 | 31.2 |
| CDY26495 | Canola | cytosol | 11.14 | 23.16 |
| Bra008648.1-P | Field mustard | cytosol | 29.62 | 18.66 |
| CDX69473 | Canola | cytosol | 30.38 | 18.21 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 |
| InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 |
| PRINTS:PR01839 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF7 | InterPro:Rad23 |
| SMART:SM00165 | SMART:SM00213 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 | SUPFAM:SSF54236 |
| InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 | EnsemblPlantsGene:TraesCS5B01G204000 | EnsemblPlants:TraesCS5B01G204000.1 | InterPro:UBA | InterPro:UBA-like_sf |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf | TIGR:cd01805 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:372089772..372094844
Molecular Weight (calculated)
41798.1 Da
IEP (calculated)
4.058
GRAVY (calculated)
-0.265
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVSVKTLKG SKFEIEVNPA DKVSDVKKLI ESSQGQNVYP ADQQMLIYQG SVLKDETTLE ENKVVENNFL VIMLRQNKGS SSAAPAKSKE PSNQAPPTQT
101: VPATPASQAP ATPAPQAVAA PAPIVPVSAP GPAATASPAP AVAVSTEAET YGQAASNLVA GGTLEATIQS ILEMGGGTWD RDTVLRALRA AFNNPERAVE
201: YLYSGIPEPM EIPAPPPSAQ PADPAQVSQA AQPAVASSGP NASPLDLFPQ ALPNASANAA GEGNLDVLRN NAQFRSLLSL VQANPQILQP LLQELGKQNP
301: QILQLIQDNQ AEFLRLINEP AEGDEDENLL EQFAEGVPQT IAVTPEENEA ILRLEGMGFD RALVLEVFFA CNKDETLAAN YLLDHMNEFD DGAPQ
101: VPATPASQAP ATPAPQAVAA PAPIVPVSAP GPAATASPAP AVAVSTEAET YGQAASNLVA GGTLEATIQS ILEMGGGTWD RDTVLRALRA AFNNPERAVE
201: YLYSGIPEPM EIPAPPPSAQ PADPAQVSQA AQPAVASSGP NASPLDLFPQ ALPNASANAA GEGNLDVLRN NAQFRSLLSL VQANPQILQP LLQELGKQNP
301: QILQLIQDNQ AEFLRLINEP AEGDEDENLL EQFAEGVPQT IAVTPEENEA ILRLEGMGFD RALVLEVFFA CNKDETLAAN YLLDHMNEFD DGAPQ
001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ
Arabidopsis Description
RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.