Factsheet for Bra028408.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010735.1-P
Bra033573.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38470.1	Bra010735.1-P	AT4G38630.1	20059542
AT5G38470.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028184.1-P	Field mustard	cytosol	91.88	92.86
CDX67404	Canola	cytosol	92.67	92.67
AT5G38470.1	Thale cress	cytosol	83.25	84.13
PGSC0003DMT400062159	Potato	cytosol	70.94	70.21
Solyc02g063130.2.1	Tomato	cytosol, extracellular	69.9	69.71
GSMUA_Achr9P15580_001	Banana	cytosol	40.05	69.23
PGSC0003DMT400032941	Potato	cytosol	70.42	68.97
Solyc02g085840.2.1	Tomato	cytosol	69.63	68.38
GSMUA_Achr5P05860_001	Banana	cytosol	65.97	64.29
Bra001050.1-P	Field mustard	cytosol	66.49	63.34
Os02t0465000-00	Rice	cytosol	14.92	61.96
GSMUA_Achr3P07380_001	Banana	cytosol	64.4	60.15
TraesCS5B01G204000.1	Wheat	cytosol	59.95	57.97
KXG35597	Sorghum	cytosol	59.95	57.54
TraesCS5D01G211900.1	Wheat	cytosol	59.42	57.47
Zm00001d037326_P001	Maize	cytosol	60.47	57.46
Os06t0264300-01	Rice	cytosol, nucleus, plastid	62.04	57.38
KXG19738	Sorghum	cytosol	61.26	57.35
Zm00001d045665_P003	Maize	cytosol	60.73	56.59
TraesCS7D01G209100.1	Wheat	cytosol	60.21	56.51
Os08t0430200-01	Rice	cytosol	59.95	56.4
TraesCS7B01G113500.1	Wheat	cytosol	59.69	56.02
TraesCS5A01G204200.1	Wheat	cytosol	57.85	55.95
TraesCS7A01G206300.1	Wheat	cytosol	59.42	55.64
Os09t0407200-01	Rice	cytosol	56.54	55.1
HORVU5Hr1G060920.1	Barley	mitochondrion	60.47	53.35
Bra026728.1-P	Field mustard	cytosol	48.69	51.81
GSMUA_Achr9P15590_001	Banana	cytosol	18.32	49.3
Bra026076.1-P	Field mustard	cytosol	47.38	49.05
Zm00001d005732_P001	Maize	cytosol	55.76	47.87
HORVU7Hr1G042100.8	Barley	cytosol	52.09	47.38
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	47.38	42.09
Zm00001d020419_P003	Maize	cytosol	49.48	41.36
Bra008649.1-P	Field mustard	cytosol	35.08	38.95
Bra008647.1-P	Field mustard	cytosol	33.51	36.06
Bra008648.1-P	Field mustard	cytosol	32.98	20.1

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra028408	EnsemblPlants:Bra028408.1
EnsemblPlants:Bra028408.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353
UniProt:M4EHZ3	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF7	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002543237	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	SEG:seg	:	:	:	:

Description

AT5G38470 (E=1e-140) | DNA repair protein RAD23, putative

Coordinates

chrA02:+:118388..120823

Molecular Weight (calculated)

40740.1 Da

IEP (calculated)

4.297

GRAVY (calculated)

-0.262

Length

382 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG TNFEIEVNPA ETISDTKKRI ETLHGAQYPA AQQMLIHQGK VLKDETTLEE NNVVDNSFIV IMLSKAKVSS SGASTASAPA PSATLAQPAQ
101: TVATPQVATP TASVPEPPSG AANVAAPSAA AASTQTDVYG QAASNLVAGN NLESTVQQIL DMGGGSWDRD TVIRALRAAF NNPERAVEYL YSGIPAQAEI
201: PPAPQAPATA GQAANPLAQT QQEATPVPAT GGPNANPLNL FPQGMPAADA GAGAGNLDFL RNSQQFQALR AMVQANPQIL QPMLQELGKQ NPQLVRLIQE
301: HQADFLRLIN EPVEGEENVM EQLEAAMPQA VTVTPEEREA IERLEAMGFD RAMVLEVFFA CNKNEELAAN YLLDHMHEFE EQ

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.