Factsheet for Bra003599.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67983	Canola	plastid	80.23	80.61
CDX79333	Canola	cytosol	72.56	80.41
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	9.3	74.07
Bra026728.1-P	Field mustard	cytosol	59.77	71.59
AT1G79650.4	Thale cress	cytosol	64.42	70.13
Bra026076.1-P	Field mustard	cytosol	58.37	68.02
KRH09619	Soybean	cytosol, nucleus, plasma membrane	32.79	67.79
Solyc03g117780.2.1	Tomato	cytosol	55.35	65.03
PGSC0003DMT400036871	Potato	cytosol	55.12	64.58
KRH23694	Soybean	cytosol	54.88	64.31
KRH47002	Soybean	cytosol, nucleus, plastid	53.49	63.36
Os02t0179300-01	Rice	plasma membrane	53.26	62.06
VIT_09s0018g01400.t01	Wine grape	cytosol	58.6	61.31
TraesCS6A01G149500.1	Wheat	cytosol	51.86	60.76
TraesCS6D01G138800.2	Wheat	cytosol	51.86	60.76
KRH44654	Soybean	cytosol, nucleus, plastid	53.49	60.37
TraesCS6B01G177400.1	Wheat	cytosol	51.4	60.22
Zm00001d053738_P001	Maize	cytosol	51.4	60.05
EES04633	Sorghum	cytosol	51.4	59.89
GSMUA_Achr1P25580_001	Banana	cytosol	51.4	57.55
HORVU6Hr1G029760.4	Barley	cytosol	45.58	57.31
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	23.02	56.9
GSMUA_Achr4P20500_001	Banana	cytosol	51.4	56.81
GSMUA_Achr7P05120_001	Banana	cytosol	31.4	49.45
Bra028184.1-P	Field mustard	cytosol	42.79	48.68
Bra028408.1-P	Field mustard	cytosol	42.09	47.38
Bra001050.1-P	Field mustard	cytosol	40.93	43.89
Bra008649.1-P	Field mustard	cytosol	23.02	28.78
Bra008647.1-P	Field mustard	cytosol	21.4	25.92
Bra008648.1-P	Field mustard	cytosol	21.86	14.99

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra003599	EnsemblPlants:Bra003599.1
EnsemblPlants:Bra003599.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043130	GO:GO:0043161	GO:GO:0070628	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	UniProt:M4CHB6	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	TMHMM:TMhelix	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000254136F
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

AT1G79650 (E=3e-143) RAD23 | RAD23; damaged DNA binding

Coordinates

chrA07:+:13989278..13992072

Molecular Weight (calculated)

46618.8 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.346

Length

430 amino acids

Sequence
(BLAST)

001: MRHVDSTWRS IAAFKIRNAL CHCLTTVGLS VSVALDLFNY YCLFRSLSPS ILAGFSPSQR RRFHILQTMK LTVKTLMGRQ FEIRVQSSDT IMAVKKNIED
101: SQGKDNYPCG QQLLIHNGKV LKDETTLVEN KVTEEGFLVV MLSKSRTAGS SSGQSSTQSA STSTTTTSST KPAAPTTTQS TAVPASPVTA QEQPAAQTDI
201: HGQAASSLAS GNRLEPLVQQ LMDMGGGSWD KETVTRALRA AHNNPERAVD YLYSGIPETA EVAVAGSGAA PVPPASGGPN SSPLDLFPQG TVAAAGTGDL
301: GTLEFLRNND QFQQLRTMVH SNPQILQPML QELGKQNPQL LRLIQENQAE FLQLVNEPYE GSDGDADIFD QPEQETPHSI NVTQAEQEAI QRLEAMGFDR
401: DLVIEAFLAC DRNEELAANY LLENSGDFAD

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.