Factsheet for HORVU6Hr1G029720.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G063820.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	79.63	24.71
KRH09619	Soybean	cytosol, nucleus, plasma membrane	81.48	21.15
HORVU6Hr1G029760.4	Barley	cytosol	96.3	15.2
Solyc03g117780.2.1	Tomato	cytosol	83.33	12.3
PGSC0003DMT400036871	Potato	cytosol	83.33	12.26
KRH23694	Soybean	cytosol	83.33	12.26
CDY33351	Canola	cytosol, nucleus, plastid	79.63	11.94
CDY52848	Canola	cytosol	77.78	11.7
Bra026728.1-P	Field mustard	cytosol	77.78	11.7
CDX81753	Canola	cytosol, nucleus, plastid	77.78	11.57
KRH47002	Soybean	cytosol, nucleus, plastid	77.78	11.57
CDY35071	Canola	cytosol	77.78	11.38
Bra026076.1-P	Field mustard	cytosol	77.78	11.38
AT1G16190.1	Thale cress	cytosol	75.93	11.14
AT1G79650.4	Thale cress	cytosol	81.48	11.14
KRH44654	Soybean	cytosol, nucleus, plastid	77.78	11.02
GSMUA_Achr4P20500_001	Banana	cytosol	77.78	10.8
VIT_09s0018g01400.t01	Wine grape	cytosol	81.48	10.71
GSMUA_Achr1P25580_001	Banana	cytosol	75.93	10.68
CDX79333	Canola	cytosol	74.07	10.31
CDX67983	Canola	plastid	74.07	9.35
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	74.07	9.3
HORVU5Hr1G060920.1	Barley	mitochondrion	51.85	6.47
HORVU7Hr1G042100.8	Barley	cytosol	27.78	3.57
GSMUA_Achr7P05120_001	Banana	cytosol	1.85	0.37

Protein Annotations

Gene3D:1.10.8.10	MapMan:35.1	UniProt:A0A287TR35	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G029720
EnsemblPlants:HORVU6Hr1G029720.1	InterPro:IPR015940	PFAM:PF00627	PRINTS:PR01839	PFscan:PS50030	PANTHER:PTHR10621
PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165	SUPFAM:SSF46934	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000B486C70	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:121894175..121895033

Molecular Weight (calculated)

6077.1 Da

IEP (calculated)

4.101

GRAVY (calculated)

-0.363

Length

54 amino acids

Sequence
(BLAST)

1: MPHAISVTPE EQEAIGRLEA MGFERARVIE AFFACDRNEQ LAANYLLEHA GDEE

Best Arabidopsis Sequence Match ( AT1G79650.4 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAV YAFVFSFAGL AFCPLYGFPK VSMAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY
201: NNPERAVDYL YSGIPQTAEV AVPVPEAQIA GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK
301: QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.