Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81753 | Canola | cytosol, nucleus, plastid | 81.52 | 82.64 |
| CDY52848 | Canola | cytosol | 80.16 | 82.17 |
| Bra026728.1-P | Field mustard | cytosol | 80.16 | 82.17 |
| Bra026076.1-P | Field mustard | cytosol | 78.53 | 78.32 |
| CDY35071 | Canola | cytosol | 77.99 | 77.78 |
| HORVU6Hr1G029720.1 | Barley | cytosol, mitochondrion, nucleus | 11.14 | 75.93 |
| CDY33351 | Canola | cytosol, nucleus, plastid | 74.18 | 75.83 |
| AT1G79650.4 | Thale cress | cytosol | 73.64 | 68.61 |
| PGSC0003DMT400036871 | Potato | cytosol | 67.66 | 67.85 |
| KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 38.04 | 67.31 |
| Solyc03g117780.2.1 | Tomato | cytosol | 66.3 | 66.67 |
| KRH23694 | Soybean | cytosol | 65.22 | 65.4 |
| KRH47002 | Soybean | cytosol, nucleus, plastid | 62.77 | 63.64 |
| KRH44654 | Soybean | cytosol, nucleus, plastid | 65.22 | 62.99 |
| TraesCS6D01G138800.2 | Wheat | cytosol | 61.96 | 62.13 |
| TraesCS6A01G149500.1 | Wheat | cytosol | 61.68 | 61.85 |
| TraesCS6B01G177400.1 | Wheat | cytosol | 61.41 | 61.58 |
| VIT_09s0018g01400.t01 | Wine grape | cytosol | 68.75 | 61.56 |
| Os02t0179300-01 | Rice | plasma membrane | 60.05 | 59.89 |
| Zm00001d053738_P001 | Maize | cytosol | 59.51 | 59.51 |
| EES04633 | Sorghum | cytosol | 59.24 | 59.08 |
| HORVU6Hr1G029760.4 | Barley | cytosol | 54.08 | 58.19 |
| GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 26.9 | 56.9 |
| GSMUA_Achr1P25580_001 | Banana | cytosol | 59.24 | 56.77 |
| GSMUA_Achr4P20500_001 | Banana | cytosol | 59.78 | 56.56 |
| GSMUA_Achr7P05120_001 | Banana | cytosol | 39.67 | 53.48 |
| AT5G38470.1 | Thale cress | cytosol | 49.73 | 48.41 |
| AT3G02540.1 | Thale cress | cytosol | 48.64 | 42.72 |
| AT5G16090.1 | Thale cress | cytosol | 18.48 | 39.77 |
Protein Annotations
| Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | EntrezGene:838188 | UniProt:A0A178W4Q3 |
| ProteinID:AAD34676.1 | ProteinID:AAF18513.1 | EMBL:AB109195 | ProteinID:AEE29418.1 | ProteinID:ANM60864.1 | ArrayExpress:AT1G16190 |
| EnsemblPlantsGene:AT1G16190 | RefSeq:AT1G16190 | TAIR:AT1G16190 | RefSeq:AT1G16190-TAIR-G | EnsemblPlants:AT1G16190.1 | TAIR:AT1G16190.1 |
| Unigene:At.22124 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006289 | GO:GO:0006950 | GO:GO:0006974 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031593 |
| GO:GO:0043130 | GO:GO:0043161 | GO:GO:0070628 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 |
| RefSeq:NP_001323115.1 | RefSeq:NP_173070.1 | ProteinID:OAP12092.1 | PFAM:PF00240 | PFAM:PF00627 | PFAM:PF09280 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR01839 |
| PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF26 | UniProt:Q84L32 | Symbol:RAD23A |
| InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 |
| SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI0000162DA5 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg | : |
Description
RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
Coordinates
chr1:+:5543119..5546103
Molecular Weight (calculated)
39844.5 Da
IEP (calculated)
4.116
GRAVY (calculated)
-0.439
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.