Factsheet for Zm00001d053738_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d040834_P001
Zm00001d047941_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT1G16190.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT1G16190.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT1G16190.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04633	Sorghum	cytosol	90.22	89.97
TraesCS6D01G138800.2	Wheat	cytosol	78.8	79.02
TraesCS6A01G149500.1	Wheat	cytosol	78.8	79.02
TraesCS6B01G177400.1	Wheat	cytosol	78.53	78.75
HORVU6Hr1G029760.4	Barley	cytosol	69.57	74.85
Os02t0179300-01	Rice	plasma membrane	73.64	73.44
Solyc03g117780.2.1	Tomato	cytosol	62.77	63.11
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	29.35	62.07
KRH23694	Soybean	cytosol	61.68	61.85
GSMUA_Achr1P25580_001	Banana	cytosol	64.13	61.46
PGSC0003DMT400036871	Potato	cytosol	61.14	61.31
GSMUA_Achr7P05120_001	Banana	cytosol	45.38	61.17
KRH09619	Soybean	cytosol, nucleus, plasma membrane	34.51	61.06
KRH47002	Soybean	cytosol, nucleus, plastid	60.05	60.88
CDY52848	Canola	cytosol	59.24	60.72
Bra026728.1-P	Field mustard	cytosol	59.24	60.72
GSMUA_Achr4P20500_001	Banana	cytosol	63.86	60.41
CDX81753	Canola	cytosol, nucleus, plastid	59.51	60.33
CDY33351	Canola	cytosol, nucleus, plastid	58.7	60.0
AT1G16190.1	Thale cress	cytosol	59.51	59.51
KRH44654	Soybean	cytosol, nucleus, plastid	59.51	57.48
AT1G79650.4	Thale cress	cytosol	60.87	56.71
Bra026076.1-P	Field mustard	cytosol	56.52	56.37
VIT_09s0018g01400.t01	Wine grape	cytosol	62.5	55.96
CDX79333	Canola	cytosol	58.97	55.93
CDY35071	Canola	cytosol	55.98	55.83
CDX67983	Canola	plastid	60.33	51.87
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	60.05	51.4
Zm00001d037326_P001	Maize	cytosol	46.74	42.79
Zm00001d045665_P003	Maize	cytosol	45.92	41.22
Zm00001d005732_P001	Maize	cytosol	45.38	37.53
Zm00001d020419_P003	Maize	cytosol	38.59	31.07

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100282427	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ProteinID:AQK60239.1
ProteinID:AQK60240.1	UniProt:B6T790	EMBL:BT087696	EMBL:EU960855	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00001504BD	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	EnsemblPlantsGene:Zm00001d053738	EnsemblPlants:Zm00001d053738_P001	EnsemblPlants:Zm00001d053738_T001
SEG:seg	:	:	:	:	:

Description

Ubiquitin receptor RAD23b

Coordinates

chr4:+:240108049..240115360

Molecular Weight (calculated)

39876.7 Da

IEP (calculated)

4.328

GRAVY (calculated)

-0.537

Length

368 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG THFEIRVQPN DTIMAVKKNI EEIQGKDSYP WGQQLLIFNG KVLKDESTLE ENKVNEDGFL VVMLSKGKTS GSTGTSSSQH SNTPATRQAP
101: PLEAPQQAPQ PPVAPITTSQ PEGLPAQAPN THDNAASNLL SGRNVDTIIN QLMEMGGGSW DKDKVQRALR AAYNNPERAV EYLYSGIPVT AEIAVPIGGQ
201: GANTTDRAPT GEAGLSGIPN TAPLDLFPQG ASNAGGGAGG GPLDFLRNNP QFQAVREMVH TNPQILQPML VELSKQNPQI LRLIEENHDE FLQLLNEPFE
301: GGEGDFLDQP EEDEMPHAIS VTPEEQEAIG RLESMGFDRA RVIEAFLACD RNEELAANYL LEHAGEED

Best Arabidopsis Sequence Match ( AT1G79650.2 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.