Factsheet for Zm00001d040834_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027514_P002
Zm00001d029782_P004
Zm00001d047373_P001
Zm00001d048343_P001
Zm00001d053738_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	Zm00001d053738_P001	AT1G16190.1	20059542
AT4G38630.1	Zm00001d027514_P002	AT2G17200.1	20059542
AT4G38630.1	Zm00001d029782_P004	AT2G17200.1	20059542
AT4G38630.1	Zm00001d047373_P001	AT2G17200.1	20059542
AT4G38630.1	Zm00001d048343_P001	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024336_P001	Maize	mitochondrion	32.16	67.37
VIT_04s0008g00060.t01	Wine grape	nucleus	16.58	32.04
EER92569	Sorghum	cytosol	51.76	25.69
Zm00001d028396_P001	Maize	nucleus	51.76	22.79
TraesCS4D01G227900.2	Wheat	cytosol	44.72	22.19
TraesCS4B01G227200.2	Wheat	cytosol	44.72	22.03
TraesCS4A01G071300.2	Wheat	cytosol	44.22	21.95
Os03t0243300-01	Rice	plasma membrane	44.22	21.89
Zm00001d047941_P001	Maize	cytosol	43.72	19.33
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	38.19	18.86
PGSC0003DMT400009215	Potato	cytosol	38.19	18.86
GSMUA_Achr4P25580_001	Banana	cytosol	37.19	18.5
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	45.23	18.29
KRH08049	Soybean	cytosol	36.18	18.09
KRH28809	Soybean	nucleus	36.68	18.02
KRH76642	Soybean	cytosol	36.18	17.78
KRH69766	Soybean	cytosol	35.68	17.53
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	34.17	17.39
GSMUA_Achr11P...	Banana	golgi, vacuole	37.19	16.02
Bra033573.1-P	Field mustard	cytosol	27.14	14.17
Bra010735.1-P	Field mustard	cytosol	27.14	14.1
AT4G38630.1	Thale cress	cytosol	27.14	13.99
CDX72742	Canola	extracellular	26.13	13.94
CDY22415	Canola	cytosol	25.63	13.6
CDY12093	Canola	cytosol	25.63	13.53
CDX90286	Canola	cytosol, nucleus, plastid	25.63	13.53
PGSC0003DMT400058116	Potato	cytosol	27.14	12.68
Zm00001d030290_P001	Maize	cytosol	15.08	8.67
Solyc03g033430.1.1	Tomato	cytosol	4.02	4.71

Protein Annotations

EnsemblPlants:Zm00001d040834_P001	EnsemblPlants:Zm00001d040834_T001	EnsemblPlantsGene:Zm00001d040834	GO:GO:0000502	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	InterPro:IPR003903	InterPro:UIM_dom	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	PFscan:PS50330
ProteinID:ONM32133.1	SEG:seg	UniParc:UPI00084534EE	UniProt:A0A1D6MTB6	MapMan:35.1	:

Description

26S proteasome non-ATPase regulatory subunit 4 homolog

Coordinates

chr3:+:68850848..68852784

Molecular Weight (calculated)

21863.1 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.237

Length

199 amino acids

Sequence
(BLAST)

001: MQVLSSTNLA ADFSRALPPG APIPMLRREV LHSFLRRRGR ARPGPHHLRR EVLHSFVFKL SPQGCASARC GEPADQGNRP WPPQALHLHW LLLVTSKNNQ
101: RCSSLRMEFA ESAAVTDSAM AEAGAVDPDL ALALQMSVQD ANMSSDTDMS KVFEDRTFVS SILNSFPGVD PNDPSVKDLL ASLHSQKETI ALFSFTLTK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.