Factsheet for TraesCS4D01G227900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G203000.1
TraesCS1B01G217000.1
TraesCS1D01G206500.1
TraesCS4B01G325900.2
TraesCS4D01G322800.1
TraesCS5A01G498100.1
TraesCS6A01G149500.1
TraesCS6B01G177400.1
TraesCS6D01G138800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	TraesCS6A01G149500.1	AT1G16190.1	20059542
AT4G38630.1	TraesCS6B01G177400.1	AT1G16190.1	20059542
AT4G38630.1	TraesCS6D01G138800.2	AT1G16190.1	20059542
AT4G38630.1	TraesCS1A01G203000.1	AT2G17200.1	20059542
AT4G38630.1	TraesCS1B01G217000.1	AT2G17200.1	20059542
AT4G38630.1	TraesCS1D01G206500.1	AT2G17200.1	20059542
AT4G38630.1	TraesCS4B01G325900.2	AT2G17200.1	20059542
AT4G38630.1	TraesCS4D01G322800.1	AT2G17200.1	20059542
AT4G38630.1	TraesCS5A01G498100.1	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G071300.2	Wheat	cytosol	99.0	99.0
TraesCS4B01G227200.2	Wheat	cytosol	98.0	97.28
Os03t0243300-01	Rice	plasma membrane	89.03	88.81
EER92569	Sorghum	cytosol	85.79	85.79
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	96.76	78.86
PGSC0003DMT400009215	Potato	cytosol	72.82	72.46
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	72.57	72.21
GSMUA_Achr4P25580_001	Banana	cytosol	71.82	72.0
Zm00001d028396_P001	Maize	nucleus	80.3	71.24
Zm00001d047941_P001	Maize	cytosol	79.8	71.11
KRH76642	Soybean	cytosol	71.07	70.37
KRH28809	Soybean	nucleus	70.82	70.12
KRH69766	Soybean	cytosol	70.07	69.38
KRH08049	Soybean	cytosol	68.33	68.84
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	67.08	68.8
Bra010735.1-P	Field mustard	cytosol	63.34	66.32
CDX90286	Canola	cytosol, nucleus, plastid	62.09	66.05
CDY12093	Canola	cytosol	61.85	65.78
AT4G38630.1	Thale cress	cytosol	63.09	65.54
Bra033573.1-P	Field mustard	cytosol	62.09	65.35
CDY22415	Canola	cytosol	61.1	65.33
CDX72742	Canola	extracellular	60.1	64.61
GSMUA_Achr11P...	Banana	golgi, vacuole	71.32	61.9
Zm00001d024336_P001	Maize	mitochondrion	14.21	60.0
PGSC0003DMT400058116	Potato	cytosol	54.11	50.94
Solyc03g033430.1.1	Tomato	cytosol	19.95	47.06
Zm00001d040834_P001	Maize	plastid	22.19	44.72
VIT_04s0008g00060.t01	Wine grape	nucleus	9.73	37.86

Protein Annotations

EnsemblPlants:TraesCS4D01G227900.2	EnsemblPlantsGene:TraesCS4D01G227900	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465
InterPro:UIM_dom	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	PFAM:PF02809
PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	SEG:seg	SMART:SM00327	SMART:SM00726
SUPFAM:SSF53300	TIGR:cd01452	MapMan:19.2.6.2.2.9	:	:	:

Description

No Description!

Coordinates

chr4D:+:387329727..387333291

Molecular Weight (calculated)

42249.4 Da

IEP (calculated)

4.131

GRAVY (calculated)

-0.285

Length

401 amino acids

Sequence
(BLAST)

001: MVLESTMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH
101: RQNKRQQQRI IVFIGSPVTY DKKVLETIGK KLKKNNVALD VVDFGETDDE KPEKLEALIA AVNSSDSSHI VHVPPGDHAL SDVLISTPIF TGEEGGSGFA
201: ASAAAAAATG ATGYDFGVDP NVDPELALAL RLSMEEERAR QEAIAKKAAE DNKDQASSST DAIMAEAELT LNAPADVDAD LLKDDDDAQL LQQALAMSMD
301: EGASGAAAVA DAAMAEAAAD DQDLALALQM SVQDAEAAGQ SDMSKVFEDR SFVTSILNSL PGVDPNDPSV KDLLASLHGQ GEQEEKKDTE DKPDKPEDGK
401: N

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.