Factsheet for PGSC0003DMT400009215

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	PGSC0003DMT400036871	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	99.5	99.5
KRH76642	Soybean	cytosol	83.87	83.46
VIT_04s0023g03620.t01	Wine grape	cytosol	83.62	83.42
KRH28809	Soybean	nucleus	83.62	83.21
KRH69766	Soybean	cytosol	83.13	82.72
KRH08049	Soybean	cytosol	80.65	81.66
GSMUA_Achr4P25580_001	Banana	cytosol	76.18	76.75
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	71.46	73.66
TraesCS4D01G227900.2	Wheat	cytosol	72.46	72.82
Os03t0243300-01	Rice	plasma membrane	72.46	72.64
TraesCS4A01G071300.2	Wheat	cytosol	72.21	72.57
TraesCS4B01G227200.2	Wheat	cytosol	72.21	72.03
EER92569	Sorghum	cytosol	71.46	71.82
Bra010735.1-P	Field mustard	cytosol	64.52	67.89
Bra033573.1-P	Field mustard	cytosol	64.02	67.72
CDY22415	Canola	cytosol	62.78	67.47
CDX90286	Canola	cytosol, nucleus, plastid	63.03	67.37
CDY12093	Canola	cytosol	62.78	67.11
AT4G38630.1	Thale cress	cytosol	64.27	67.1
CDX72742	Canola	extracellular	61.79	66.76
GSMUA_Achr11P...	Banana	golgi, vacuole	73.2	63.85
PGSC0003DMT400058116	Potato	cytosol	67.25	63.62
Zm00001d028396_P001	Maize	nucleus	69.23	61.73
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	73.2	59.96
Zm00001d047941_P001	Maize	cytosol	66.5	59.56
Zm00001d024336_P001	Maize	mitochondrion	12.41	52.63
Zm00001d040834_P001	Maize	plastid	18.86	38.19

Protein Annotations

EntrezGene:102594714	MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	ncoils:Coil	InterPro:IPR002035	InterPro:IPR003903
InterPro:IPR036465	UniProt:M0ZVS7	PFAM:PF02809	PFAM:PF13519	EnsemblPlantsGene:PGSC0003DMG400003575	PGSC:PGSC0003DMG400003575
EnsemblPlants:PGSC0003DMT400009215	PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327
SMART:SM00726	SUPFAM:SSF53300	InterPro:UIM_dom	UniParc:UPI0002958EDE	InterPro:VWF_A	RefSeq:XP_006340751.1
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

26S proteasome non-atpase regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400003575]

Coordinates

chr2:-:39227880..39234741

Molecular Weight (calculated)

42741.0 Da

IEP (calculated)

4.207

GRAVY (calculated)

-0.405

Length

403 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPNRFQALA DAVNLICGAK TQSNPENTVG ILTMAGKGVR VLVTPTSDLG KILACMHGLE IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGSPVKY DKKVLEMIGR KLKKNSVALD VVNFGEDDEG KAEKLEALVA ALNTNDSSHI IHIPPGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAAAAAAG GVSGYDFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EEAGNQEKGE NQSTSQDVAM AENVNAGTSE PESKATDLMD DENALLQQAL
301: AMSMDDSSSN VATRDTDMSE AASEDQDLAL ALQLSVQDST NDQSNQTDMS KLLADQSFVS SILASLPGVD PNDPSVKDLL ASMQGQSEKK DEDNDKEQKE
401: EKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.