Factsheet for GSMUA_Achr11P01110_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

nucleus 2
cytosol 1
golgi 3
extracellular 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02760_001
GSMUA_Achr1P02770_001
GSMUA_Achr1P14990_001
GSMUA_Achr1P25580_001
GSMUA_Achr3P00530_001
GSMUA_Achr4P20500_001
GSMUA_Achr5P11110_001
GSMUA_Achr7P04060_001
GSMUA_Achr7P05120_001
GSMUA_Achr7P05130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	GSMUA_Achr1P25580_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr4P20500_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr7P05120_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr7P05130_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr1P02760_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr1P02770_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr1P14990_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr3P00530_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr5P11110_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr7P04060_001	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25580_001	Banana	cytosol	69.91	80.75
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	65.58	77.49
PGSC0003DMT400009215	Potato	cytosol	63.85	73.2
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	63.64	72.95
KRH08049	Soybean	cytosol	62.77	72.86
KRH28809	Soybean	nucleus	63.85	72.84
KRH76642	Soybean	cytosol	63.85	72.84
Os03t0243300-01	Rice	plasma membrane	62.77	72.14
KRH69766	Soybean	cytosol	63.2	72.1
TraesCS4A01G071300.2	Wheat	cytosol	62.12	71.57
EER92569	Sorghum	cytosol	62.12	71.57
TraesCS4D01G227900.2	Wheat	cytosol	61.9	71.32
TraesCS4B01G227200.2	Wheat	cytosol	62.34	71.29
AT4G38630.1	Thale cress	cytosol	53.9	64.51
Bra010735.1-P	Field mustard	cytosol	53.25	64.23
Bra033573.1-P	Field mustard	cytosol	52.81	64.04
CDY22415	Canola	cytosol	51.73	63.73
CDY12093	Canola	cytosol	51.95	63.66
CDX90286	Canola	cytosol, nucleus, plastid	51.95	63.66
CDX72742	Canola	extracellular	51.3	63.54
Zm00001d028396_P001	Maize	nucleus	60.17	61.5
Zm00001d047941_P001	Maize	cytosol	59.09	60.67
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	62.77	58.94
PGSC0003DMT400058116	Potato	cytosol	49.13	53.29
Zm00001d024336_P001	Maize	mitochondrion	10.61	51.58
Solyc03g033430.1.1	Tomato	cytosol	18.4	50.0
VIT_04s0008g00060.t01	Wine grape	nucleus	10.17	45.63
Zm00001d040834_P001	Maize	plastid	16.02	37.19

Protein Annotations

MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr11G01110_001	EnsemblPlants:GSMUA_Achr11P01110_001	EnsemblPlants:GSMUA_Achr11T01110_001
InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	UniProt:M0RNE2	PFAM:PF02809	PFAM:PF13519
PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726
SUPFAM:SSF53300	InterPro:UIM_dom	UniParc:UPI000294FF9B	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf

Description

26S proteasome non-ATPase regulatory subunit 4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G01110_001]

Coordinates

chr11:+:749864..755936

Molecular Weight (calculated)

49465.1 Da

IEP (calculated)

4.221

GRAVY (calculated)

-0.237

Length

462 amino acids

Sequence
(BLAST)

001: MPFSRFAFIF FSITRDNIQY DRYILETLSI GSPSLPSLSL SRFVGLVDFL VTMVLEATMI CIDNSEWMRN GDYAPSRFQA QADAINLICG AKTQSNPENT
101: VGVLTMAGNG VRVLVTPTSD LGKILSCIHG LVVGGEANLT AAIQVAQLAL KHRQNKRQQQ RIIVFAGSPI KYDNKTLEAI GRKLKKNSVA LDVVNFGESD
201: DGKPEKLEAL ITAVNNNDSS HIVHVPAGQN ALSDVLISTP IVTGDGDEGS GFVAAASVAA AGGGGLSGFD FGVDPNVDPE LALALRISME EERARQEAAA
301: KRAAEQAAEQ EKVRELASGS RDDTMAEPVS NSTLMVDDKG HNLTSQDDEA ALLEQALAMS MDVAKSGTAP VVDTDMSDAT VDDQELAYAL QMSVQDSARD
401: MSSQSEMSKV LEDQSFVSSI LNSLPGVDPN DPSLKDLLAS LQGESEPQQK QKEDKPEEDH DD

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.