Factsheet for GSMUA_Achr1P02760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g060590.1.1	Tomato	cytosol	24.81	23.88
Solyc02g061640.1.1	Tomato	cytosol	24.81	23.88
Solyc02g061720.1.1	Tomato	cytosol	28.68	10.95
GSMUA_Achr5P11110_001	Banana	cytosol	42.64	10.32
GSMUA_Achr1P14990_001	Banana	cytosol	41.09	9.57
GSMUA_Achr3P00530_001	Banana	cytosol	40.31	9.4
Zm00001d048343_P001	Maize	cytosol	38.76	9.38
CDY47488	Canola	cytosol	37.98	9.33
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	37.21	9.3
CDY26796	Canola	cytosol	37.98	9.26
TraesCS4B01G325900.2	Wheat	cytosol	37.98	9.21
HORVU4Hr1G082050.15	Barley	cytosol	37.98	9.18
Bra037281.1-P	Field mustard	cytosol	37.98	9.04
Zm00001d027514_P002	Maize	cytosol	37.21	8.96
EER92919	Sorghum	cytosol	37.21	8.92
CDX75489	Canola	cytosol	35.66	8.91
CDX88001	Canola	cytosol	37.21	8.86
Solyc02g060580.1.1	Tomato	cytosol	20.93	8.82
CDY07870	Canola	cytosol	36.43	8.74
Bra009657.1-P	Field mustard	cytosol	37.21	8.7
EER92003	Sorghum	cytosol	38.76	8.62
CDY31374	Canola	cytosol, plastid	35.66	8.58
CDX71349	Canola	cytosol	36.43	8.58
Os10t0542200-01	Rice	plasma membrane, plastid	37.98	8.52
GSMUA_Achr7P04060_001	Banana	cytosol	35.66	8.44
Zm00001d029782_P004	Maize	cytosol	38.76	8.43
PGSC0003DMT400045106	Potato	cytosol	30.23	8.41
AT2G17190.1	Thale cress	cytosol	34.88	8.36
Bra002028.1-P	Field mustard	cytosol, plastid	35.66	8.36
AT2G17200.1	Thale cress	cytosol	35.66	8.35
KRH07920	Soybean	cytosol	34.88	8.32
VIT_03s0038g03680.t01	Wine grape	cytosol	37.21	8.28
Zm00001d047373_P001	Maize	cytosol	36.43	8.16
TraesCS1D01G206500.1	Wheat	cytosol	35.66	8.16
TraesCS1B01G217000.1	Wheat	cytosol	35.66	8.1
KRH69678	Soybean	nucleus	34.11	8.07
Os03t0131300-01	Rice	plasma membrane	32.56	7.87
PGSC0003DMT400003987	Potato	cytosol	33.33	7.79
KRH76549	Soybean	cytosol	32.56	7.76
KRH28904	Soybean	cytosol	32.56	7.76
TraesCS1A01G203000.1	Wheat	cytosol	34.11	7.75
Solyc03g032160.2.1	Tomato	plastid	33.33	7.72
Solyc02g082800.2.1	Tomato	plastid	32.56	7.59
HORVU1Hr1G052260.2	Barley	cytosol	33.33	7.53
Solyc02g061680.1.1	Tomato	cytosol	27.91	7.45
Solyc02g061610.1.1	Tomato	cytosol	27.13	7.03
TraesCS4D01G322800.1	Wheat	cytosol	30.23	6.87
Solyc02g061670.1.1	Tomato	cytosol	18.6	6.84
Solyc02g060600.1.1	Tomato	cytosol	14.73	6.76
TraesCS5A01G498100.1	Wheat	cytosol	29.46	6.69
KRH07807	Soybean	cytosol, mitochondrion, nucleus	3.1	5.97
Solyc02g060570.1.1	Tomato	cytosol	32.56	5.92
CDX69126	Canola	nucleus	32.56	5.83
Bra011602.1-P	Field mustard	cytosol	17.83	5.03
PGSC0003DMT400048093	Potato	extracellular	3.1	4.94
Solyc02g061710.1.1	Tomato	nucleus	4.65	2.45
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	6.2	1.76

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02760_001	EnsemblPlants:GSMUA_Achr1T02760_001	EnsemblPlantsGene:GSMUA_Achr1G02760_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10677
PANTHER:PTHR10677:SF28	PFAM:PF00240	PFscan:PS50053	SEG:seg	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0002954167	UniProt:M0RWI4	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G02760_001]

Coordinates

chr1:+:2241819..2243120

Molecular Weight (calculated)

13605.0 Da

IEP (calculated)

5.846

GRAVY (calculated)

-0.192

Length

129 amino acids

Sequence
(BLAST)

001: MADDGDSDDG SGPPSATVHI RCSSGSKFSV QTPLDATVDA FKAVVAGSCD VPVEEQRMIY KGWVLNDDQT LASYGGALQT GVAWALARAQ ALGASGERLG
101: RPRRPNQNFR FGSVLVRLLV GSIEPTKPI

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.