CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07920	Soybean	cytosol	95.6	96.3
KRH76549	Soybean	cytosol	81.28	81.89
KRH28904	Soybean	cytosol	79.45	80.04
KRH07807	Soybean	cytosol, mitochondrion, nucleus	9.36	76.12
Solyc02g082800.2.1	Tomato	plastid	63.85	62.93
PGSC0003DMT400003987	Potato	cytosol	63.3	62.5
Solyc03g032160.2.1	Tomato	plastid	61.83	60.5
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	56.88	60.08
GSMUA_Achr5P11110_001	Banana	cytosol	57.61	58.91
Os03t0131300-01	Rice	plasma membrane	55.96	57.12
GSMUA_Achr1P14990_001	Banana	cytosol	57.8	56.86
PGSC0003DMT400048093	Potato	extracellular	8.44	56.79
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.16	56.48
GSMUA_Achr3P00530_001	Banana	cytosol	57.25	56.42
EER92919	Sorghum	cytosol	55.41	56.13
Zm00001d048343_P001	Maize	cytosol	54.68	55.91
TraesCS4B01G325900.2	Wheat	cytosol	54.5	55.83
Zm00001d027514_P002	Maize	cytosol	54.31	55.22
HORVU4Hr1G082050.15	Barley	cytosol	53.95	55.06
TraesCS1D01G206500.1	Wheat	cytosol	56.33	54.43
TraesCS1B01G217000.1	Wheat	cytosol	56.7	54.4
TraesCS1A01G203000.1	Wheat	cytosol	56.33	54.05
Os10t0542200-01	Rice	plasma membrane, plastid	55.96	53.04
Zm00001d047373_P001	Maize	cytosol	55.78	52.78
TraesCS4D01G322800.1	Wheat	cytosol	54.68	52.46
GSMUA_Achr7P04060_001	Banana	cytosol	52.29	52.29
EER92003	Sorghum	cytosol	55.6	52.24
TraesCS5A01G498100.1	Wheat	cytosol	54.31	52.11
PGSC0003DMT400045106	Potato	cytosol	43.3	50.86
HORVU1Hr1G052260.2	Barley	cytosol	53.03	50.61
Zm00001d029782_P004	Maize	cytosol	54.31	49.92
Solyc02g060580.1.1	Tomato	cytosol	26.97	48.04
Solyc02g060590.1.1	Tomato	cytosol	11.38	46.27
Solyc02g060600.1.1	Tomato	cytosol	23.85	46.26
Solyc02g061670.1.1	Tomato	cytosol	28.81	44.73
Solyc02g061720.1.1	Tomato	cytosol	27.52	44.38
Solyc02g061640.1.1	Tomato	cytosol	10.64	43.28
Solyc02g061680.1.1	Tomato	cytosol	37.43	42.24
Solyc02g061610.1.1	Tomato	cytosol	37.06	40.56
Solyc02g061710.1.1	Tomato	nucleus	17.06	37.96
GSMUA_Achr1P02760_001	Banana	cytosol	8.07	34.11
Solyc02g060570.1.1	Tomato	cytosol	38.17	29.34

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100806776	MapMan:19.3.4.6	Gene3D:3.10.20.90	EMBL:ACUP02000728	EnsemblPlantsGene:GLYMA_02G041700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JCA6	InterPro:IPR000626	InterPro:IPR015940
EnsemblPlants:KRH69678	ProteinID:KRH69678	ProteinID:KRH69678.1	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00165	SMART:SM00213	SMART:SM00727
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002337777
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:3929428..3936051

Molecular Weight (calculated)

58070.1 Da

IEP (calculated)

4.427

GRAVY (calculated)

-0.497

Length

545 amino acids

Sequence
(BLAST)

001: MGGDSAVEES EGVNVNINVR CSNGSKFSVQ IAVDSTVSSF KDAAACSCDI PAEQQRLIYK GRILKDDQTL RSYGLEADHT VHLVRGSALA NPTGGTNTSS
101: TDTNTNTNIP TDNARVAGAN EGEGLGGLGF GASLFPGLGV NGTGGNGLFG EGFPDLEQMQ QPFISNPNLV REIMNSPTMQ NLINNPEIVR NLIMNNPQMQ
201: ELMDRNPELA HILNDPSTLR QTLEATRNPE IMREMMRNTD RAMSNIESSP EGFNMLRRMY ENIQEPFLNA TTMAGNTGNN NAAVSGTHGG HARDPSTNPS
301: TTSSEATAGS PLPNTNPLPN PWSSTGTGGA QNNSRRSLTT GVDARQQGPT GLGGHGLPDL ESMLGGSAMP DPALLTQLMQ NPAISQMMQS MLSNPQTLNQ
401: ILGANTEQRG MPDLNSLREV MQNPEFLRLF SSPETLQQLL SFQQTLMSQL GQQQSTWESG QTGGGTGPMN NLGLEMLSSM FGGLGAGSLA VPNRSNEPPE
501: QLYASQLSQL QEMGFFDSQE NIRALIATSG NVHAAVERLL GNSGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.