Factsheet for Os03t0131300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0269200-01
Os03t0243300-01
Os05t0275700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Os05t0275700-01	AT1G79810.1	23336935
AT2G17200.1	Os05t0275700-01	AT1G79810.1	23336935
AT2G17200.1	Os02t0269200-01	AT3G16120.1	21798944
AT2G17200.1	Os03t0243300-01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92919	Sorghum	cytosol	82.21	81.6
Zm00001d027514_P002	Maize	cytosol	81.27	80.97
Zm00001d048343_P001	Maize	cytosol	78.09	78.24
TraesCS4B01G325900.2	Wheat	cytosol	77.15	77.44
HORVU4Hr1G082050.15	Barley	cytosol	76.22	76.22
TraesCS5A01G498100.1	Wheat	cytosol	75.47	70.95
TraesCS4D01G322800.1	Wheat	cytosol	74.72	70.25
Os10t0542200-01	Rice	plasma membrane, plastid	72.85	67.65
KRH07807	Soybean	cytosol, mitochondrion, nucleus	8.24	65.67
GSMUA_Achr5P11110_001	Banana	cytosol	63.11	63.23
PGSC0003DMT400048093	Potato	extracellular	8.99	59.26
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	50.0	58.68
PGSC0003DMT400003987	Potato	cytosol	59.93	57.97
Solyc03g032160.2.1	Tomato	plastid	60.11	57.63
Solyc02g082800.2.1	Tomato	plastid	59.36	57.32
KRH76549	Soybean	cytosol	57.3	56.56
KRH07920	Soybean	cytosol	56.74	56.01
KRH28904	Soybean	cytosol	56.74	56.01
KRH69678	Soybean	nucleus	57.12	55.96
VIT_03s0038g03680.t01	Wine grape	cytosol	60.11	55.34
CDX88001	Canola	cytosol	55.81	54.98
CDY26796	Canola	cytosol	53.18	53.69
Bra009657.1-P	Field mustard	cytosol	55.43	53.62
CDY31374	Canola	cytosol, plastid	53.75	53.54
AT2G17190.1	Thale cress	cytosol	53.93	53.53
CDY07870	Canola	cytosol	53.93	53.53
CDX75489	Canola	cytosol	51.5	53.29
CDX71349	Canola	cytosol	54.31	52.92
Bra002028.1-P	Field mustard	cytosol, plastid	54.49	52.91
AT2G17200.1	Thale cress	cytosol	54.49	52.81
CDY47488	Canola	cytosol	51.31	52.19
Bra037281.1-P	Field mustard	cytosol	52.43	51.66
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	49.81	51.55
Bra011602.1-P	Field mustard	cytosol	44.01	51.42
PGSC0003DMT400045106	Potato	cytosol	39.51	45.47
Solyc02g060600.1.1	Tomato	cytosol	23.6	44.84
Solyc02g061720.1.1	Tomato	cytosol	27.34	43.2
Solyc02g060580.1.1	Tomato	cytosol	24.72	43.14
Solyc02g061670.1.1	Tomato	cytosol	27.9	42.45
Solyc02g061680.1.1	Tomato	cytosol	35.96	39.75
Solyc02g060590.1.1	Tomato	cytosol	9.93	39.55
Solyc02g061710.1.1	Tomato	nucleus	17.98	39.18
Solyc02g061610.1.1	Tomato	cytosol	36.52	39.16
Solyc02g061640.1.1	Tomato	cytosol	9.18	36.57
CDX69126	Canola	nucleus	44.76	33.15
GSMUA_Achr1P02760_001	Banana	cytosol	7.87	32.56
Solyc02g060570.1.1	Tomato	cytosol	37.83	28.49

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EntrezGene:4331510	ProteinID:ABF93812.1	EMBL:AK100656
ProteinID:BAF10776.1	ProteinID:BAS82140.1	ProteinID:BAS82141.1	ProteinID:EEE58276.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	EnsemblPlantsGene:Os03g0131300	EnsemblPlants:Os03t0131300-01	PFAM:PF00240
PFAM:PF00627	ScanProsite:PS00299	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28
UniProt:Q10S80	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0000DB4842	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_015629748.1	SEG:seg	:	:

Description

Ubiquilin domain containing protein. (Os03t0131300-01);Similar to Ubiquitin family protein, expressed. (Os03t0131300-02)

Coordinates

chr3:-:1791608..1796372

Molecular Weight (calculated)

56166.5 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.328

Length

534 amino acids

Sequence
(BLAST)

001: MSGGDGEEAA AAAAAATLHI RCTNGSKLAV RADLGLSVGA FKAIVAESCD VPAPQQRLIY KGRILKDEQT LASYGVETDH TIHMVRGAAP PPASTAPPAA
101: NNVTPAINAT TASNSPAVGF GGLLHGLGGS GSANSGGLGS FGSGLPELSQ MQQQLSENPT LMREIMNMPL MQNILNSPDL IRNIIMNNPQ MREIVDRNPD
201: LAHVLNDPSI LRQTVEAARN PELMREMMRN TDRAMSNIES SPEGFNMLRR MYETVQEPFL NATTMAGEGD RSSNPFSALL GNHGSNQARD PAANSPTTTS
301: ESTTGSPAPN TNPLPNPWST TAGAAQGATR PSPVTNARSA TAGGLGGLSS TDLGGMLGGG SDTSFLSQVL QNPTMMQMMQ NIMSNPQSMN QLLNINPNVR
401: NMMESNTQLR EMFQNPEFVR QLTSPETLQQ LISFQQSLMS QLGQQQAGPE RTQSGAGAGN TNLNNLMSMF SGLGAGGGLG VPSAPNVPPE ELYATQLAQL
501: QEMGFFDTQE NIRALIATAG NVHAAVERLL GNIG

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.