Factsheet for Bra011602.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002028.1-P	Field mustard	cytosol, plastid	69.8	58.0
Bra009657.1-P	Field mustard	cytosol	67.83	56.16
Bra037281.1-P	Field mustard	cytosol	65.86	55.54
VIT_03s0038g03680.t01	Wine grape	cytosol	62.14	48.97
CDX69126	Canola	nucleus	74.62	47.3
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	45.95	46.15
TraesCS4B01G325900.2	Wheat	cytosol	52.74	45.3
Zm00001d027514_P002	Maize	cytosol	52.52	44.78
GSMUA_Achr5P11110_001	Banana	cytosol	52.08	44.65
EER92919	Sorghum	cytosol	52.3	44.42
HORVU4Hr1G082050.15	Barley	cytosol	51.86	44.38
Os03t0131300-01	Rice	plasma membrane	51.42	44.01
TraesCS1D01G206500.1	Wheat	cytosol	54.05	43.79
Zm00001d048343_P001	Maize	cytosol	50.98	43.71
TraesCS1B01G217000.1	Wheat	cytosol	54.05	43.49
EER92003	Sorghum	cytosol	55.14	43.45
TraesCS1A01G203000.1	Wheat	cytosol	53.83	43.31
GSMUA_Achr7P04060_001	Banana	cytosol	51.64	43.3
GSMUA_Achr3P00530_001	Banana	cytosol	52.3	43.22
TraesCS5A01G498100.1	Wheat	cytosol	53.61	43.13
GSMUA_Achr1P14990_001	Banana	cytosol	52.08	42.96
TraesCS4D01G322800.1	Wheat	cytosol	53.17	42.78
Zm00001d047373_P001	Maize	cytosol	53.39	42.36
Os10t0542200-01	Rice	plasma membrane, plastid	53.17	42.26
Zm00001d029782_P004	Maize	cytosol	54.27	41.82
HORVU1Hr1G052260.2	Barley	cytosol	50.98	40.81
GSMUA_Achr1P02760_001	Banana	cytosol	5.03	17.83

Protein Annotations

EnsemblPlants:Bra011602.1	EnsemblPlants:Bra011602.1-P	EnsemblPlantsGene:Bra011602	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015940	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	InterPro:Ubiquilin
PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	PFAM:PF00627	PFscan:PS50030	SEG:seg	SMART:SM00165
SMART:SM00727	SUPFAM:SSF46934	UniParc:UPI0002547130	UniProt:M4D545	MapMan:19.3.4.6	:

Description

AT2G17200 (E=1e-130) | ubiquitin family protein

Coordinates

chrA01:+:1455183..1457527

Molecular Weight (calculated)

49341.6 Da

IEP (calculated)

4.656

GRAVY (calculated)

-0.477

Length

457 amino acids

Sequence
(BLAST)

001: MVGEVDSNDP QTFVDGGGEV VPVNVRCSNG SKFIVRTSLE STVEFQSSGS SELRRLQADH ALHMVRGSAP PASQTITPPS VTRGVASNTG GESLFGFNPL
101: GSGNAMPRGM FGAAGLPNLE RAQQQLAQNP NMVRDMMNAP AIQNIMNNPE LMRTLIMSNL QMRELVDRNP ELGHILNDPS VLRQSLEAAG NPELMREMTR
201: STDRAMSNIE ATPEGFNMLR RMYENVQEPL MNATTNNAGS NLFATTLLGN QGAASNNPMT TNGETGTGNA VPNTNPLPNP WDAAGGQTTT AGRTNSGGDT
301: RAPGLGGLGM LGGDPTVGAT PDASQMNQFL QNPAMSQMMQ SLLSNPQYMN QIMSLNPQLQ SLMDSSPQVR EMMQNPEFLR MLSSPETMQQ MMSLQQSLLY
401: RNRSTTTVVP PEERYATQLQ QLEEMGFFDR AENIRALRAT NGNVNAAVER LLGSIGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.