Factsheet for TraesCS4B01G325900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G071300.2
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS4B01G227200.2
TraesCS4D01G227900.2
TraesCS5B01G340700.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7A01G303900.1
TraesCS7B01G204300.2
TraesCS7D01G056400.1
TraesCS7D01G299400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17190.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17190.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17200.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4D01G227900.2	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G082050.15	Barley	cytosol	89.85	89.51
TraesCS5A01G498100.1	Wheat	cytosol	93.23	87.32
TraesCS4D01G322800.1	Wheat	cytosol	93.23	87.32
Os03t0131300-01	Rice	plasma membrane	77.44	77.15
EER92919	Sorghum	cytosol	77.44	76.58
Zm00001d027514_P002	Maize	cytosol	76.88	76.31
Zm00001d048343_P001	Maize	cytosol	75.38	75.23
TraesCS1B01G217000.1	Wheat	cytosol	69.92	65.49
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.71	61.19
GSMUA_Achr5P11110_001	Banana	cytosol	60.9	60.79
PGSC0003DMT400048093	Potato	extracellular	8.83	58.02
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	49.06	57.36
KRH76549	Soybean	cytosol	57.89	56.93
PGSC0003DMT400003987	Potato	cytosol	59.02	56.88
AT2G17190.1	Thale cress	cytosol	57.33	56.69
CDX88001	Canola	cytosol	57.33	56.27
CDY31374	Canola	cytosol, plastid	56.39	55.97
CDY26796	Canola	cytosol	55.64	55.95
CDY07870	Canola	cytosol	56.39	55.76
Solyc03g032160.2.1	Tomato	plastid	58.27	55.66
KRH07920	Soybean	cytosol	56.58	55.64
Solyc02g082800.2.1	Tomato	plastid	57.71	55.52
AT2G17200.1	Thale cress	cytosol	57.33	55.35
Bra002028.1-P	Field mustard	cytosol, plastid	57.14	55.27
KRH28904	Soybean	cytosol	56.2	55.27
VIT_03s0038g03680.t01	Wine grape	cytosol	60.15	55.17
CDX71349	Canola	cytosol	56.77	55.11
Bra009657.1-P	Field mustard	cytosol	56.77	54.71
KRH69678	Soybean	nucleus	55.83	54.5
CDY47488	Canola	cytosol	53.38	54.1
Bra037281.1-P	Field mustard	cytosol	54.7	53.69
CDX75489	Canola	cytosol	52.07	53.68
Bra011602.1-P	Field mustard	cytosol	45.3	52.74
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	49.06	50.58
PGSC0003DMT400045106	Potato	cytosol	38.91	44.61
Solyc02g060600.1.1	Tomato	cytosol	23.5	44.48
Solyc02g060580.1.1	Tomato	cytosol	24.44	42.48
Solyc02g061720.1.1	Tomato	cytosol	26.5	41.72
Solyc02g061670.1.1	Tomato	cytosol	27.26	41.31
Solyc02g061710.1.1	Tomato	nucleus	17.86	38.78
GSMUA_Achr1P02760_001	Banana	cytosol	9.21	37.98
Solyc02g061680.1.1	Tomato	cytosol	34.21	37.68
Solyc02g061610.1.1	Tomato	cytosol	34.96	37.35
Solyc02g060590.1.1	Tomato	cytosol	9.21	36.57
Solyc02g061640.1.1	Tomato	cytosol	8.83	35.07
CDX69126	Canola	nucleus	45.49	33.56
Solyc02g060570.1.1	Tomato	cytosol	37.03	27.79

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:TraesCS4B01G325900	EnsemblPlants:TraesCS4B01G325900.2	InterPro:UBA	InterPro:UBA-like_sf
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	TIGR:cd01769	TIGR:cd14399	SEG:seg

Description

No Description!

Coordinates

chr4B:-:616997038..617004281

Molecular Weight (calculated)

55353.6 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.336

Length

532 amino acids

Sequence
(BLAST)

001: MGGGEGGAGG EPAAGAAPAA AAQATLHIRG TSGNKFAVRA DLGATVGELK AVVAGSCDVP APQQRLIYKG RILKDDQTLA SYGVEADHTI HMVRGAAPPA
101: TSAAPAAANL GTSTTTPANT PPAGLGGLFQ GLGSTGTAGS GAFGLSASGL PGLEQMQQQL TENPNLMREV LNTPAMQNIM NSPDLIRDLI MNNPQMRELV
201: DRNPDLAHVL NDPSILRQTV EAARNPELMR EMMRNTDRAM SNIESSPEGF NMLRRMYETV QEPFMNATTM AGEGDTTPNP FAALLGDQGS NQARDPTGDA
301: PTTAPAPNTN PLPNPWGANA GAAQGAARPS AAARSATSGG LGGLGSADLG SMLGGGSDAS LLNQVIQNPA MMQMMQNIMS NPQTMNQLLN MNPNVRNMME
401: SNTQMREMFQ NPEFLRQLTS PETLQQLASF QQALTSQLGQ QAAGQERTQA GTTPGNVNLN SLMSMFSGLG AGGGLGGVPN VPTVPPEERY ATQLAQLQEM
501: GFFDPQENIR ALLATNGNVH AAVERLLGNF GQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.