CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26796	Canola	cytosol	69.38	67.67
CDY31374	Canola	cytosol, plastid	70.16	67.54
CDY47488	Canola	cytosol	68.6	67.43
CDX71349	Canola	cytosol	71.12	66.97
CDX88001	Canola	cytosol	69.96	66.61
CDY07870	Canola	cytosol	68.99	66.17
VIT_03s0038g03680.t01	Wine grape	cytosol	63.37	56.38
GSMUA_Achr5P11110_001	Banana	cytosol	54.07	52.35
TraesCS4B01G325900.2	Wheat	cytosol	53.68	52.07
Zm00001d027514_P002	Maize	cytosol	54.07	52.05
EER92919	Sorghum	cytosol	54.26	52.04
HORVU4Hr1G082050.15	Barley	cytosol	53.49	51.69
Os03t0131300-01	Rice	plasma membrane	53.29	51.5
CDX69126	Canola	nucleus	71.9	51.46
TraesCS1D01G206500.1	Wheat	cytosol	56.01	51.24
Zm00001d048343_P001	Maize	cytosol	52.91	51.22
TraesCS1B01G217000.1	Wheat	cytosol	56.01	50.88
TraesCS1A01G203000.1	Wheat	cytosol	55.81	50.7
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	44.57	50.55
EER92003	Sorghum	cytosol	56.01	49.83
GSMUA_Achr1P14990_001	Banana	cytosol	53.1	49.46
GSMUA_Achr7P04060_001	Banana	cytosol	52.13	49.36
Os10t0542200-01	Rice	plasma membrane, plastid	54.84	49.22
GSMUA_Achr3P00530_001	Banana	cytosol	52.52	49.01
TraesCS5A01G498100.1	Wheat	cytosol	53.68	48.77
TraesCS4D01G322800.1	Wheat	cytosol	53.49	48.59
HORVU1Hr1G052260.2	Barley	cytosol	53.29	48.16
Zm00001d047373_P001	Maize	cytosol	53.68	48.09
Zm00001d029782_P004	Maize	cytosol	54.65	47.55
GSMUA_Achr1P02760_001	Banana	cytosol	8.91	35.66

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EnsemblPlants:CDX75489	ProteinID:CDX75489	ProteinID:CDX75489.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00121386001	InterPro:IPR000626	InterPro:IPR015940
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EEABB8	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA01g02130D

Coordinates

chrLK031804:-:1362787..1365397

Molecular Weight (calculated)

54992.2 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.442

Length

516 amino acids

Sequence
(BLAST)

001: MVGEVDSNEP QTVVDGGQGG EVVSVNVRCS NGSKFSVRTS LESTVESFKA LVAQNCDVPA NQQRLIYKGR ILMDDHTLLS YGLQADQALH MVRGSAPPGS
101: QTITPPSVTR GVGSNDTPNT GGESLFGFNP LGSGNAMPPG LFGAAGLPDL QQAHQQLAQN PNMVRDMMNA PTIQNIMNNP ELMRTLIMSN PQMRELVDRN
201: PELGHILNDP SVLRQSLEAA RNPELMREMT RSTDRAMSNI EATPEGFNML RRMYENVQEP LMNATTNNAG SNLFATTLLG NQGAASNNPM TTNGETGTGN
301: AVPNTNPLPN PWDAAGGQTT TAGRTNSGGD TRAPGLGGLG MLGGDPTVGA TPDASQMNQF LQNPAMSQMM QSLLSNPQYM NQIMSLNPQL QSLMDSSPQV
401: REMMQNPEFL RMLSSPETMQ QMMSLQQSLL SGNRSTTTGN KGGLDSLMSI FGSLGAGGGL SGANQSNVPP EELYATQLQQ LEEMGFFDRA ENIRALRAAN
501: GNVNAAVERL LGSIGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.