Factsheet for HORVU1Hr1G052260.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G073190.1
HORVU4Hr1G063820.1
HORVU7Hr1G011400.2
HORVU7Hr1G072200.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	HORVU7Hr1G072200.2	AT1G79810.1	23336935
AT2G17200.1	HORVU7Hr1G072200.2	AT1G79810.1	23336935
AT2G17200.1	HORVU3Hr1G073190.1	AT3G16120.1	21798944
AT2G17200.1	HORVU7Hr1G011400.2	AT3G16120.1	21798944
AT2G17200.1	HORVU4Hr1G063820.1	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G217000.1	Wheat	cytosol	90.37	90.85
TraesCS1D01G206500.1	Wheat	cytosol	89.67	90.78
TraesCS1A01G203000.1	Wheat	cytosol	90.02	90.49
Os10t0542200-01	Rice	plasma membrane, plastid	76.88	76.35
EER92003	Sorghum	cytosol	75.31	74.14
Zm00001d047373_P001	Maize	cytosol	74.26	73.61
Zm00001d029782_P004	Maize	cytosol	72.5	69.81
HORVU4Hr1G082050.15	Barley	cytosol	61.3	65.54
GSMUA_Achr5P11110_001	Banana	cytosol	55.69	59.66
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	44.83	56.26
PGSC0003DMT400003987	Potato	cytosol	54.29	56.16
Solyc03g032160.2.1	Tomato	plastid	54.64	56.01
Solyc02g082800.2.1	Tomato	plastid	53.94	55.7
KRH76549	Soybean	cytosol	52.36	55.27
KRH28904	Soybean	cytosol	51.66	54.53
AT2G17200.1	Thale cress	cytosol	52.54	54.45
CDY31374	Canola	cytosol, plastid	50.96	54.29
Bra002028.1-P	Field mustard	cytosol, plastid	52.19	54.18
CDY26796	Canola	cytosol	50.09	54.06
AT2G17190.1	Thale cress	cytosol	50.79	53.9
CDX88001	Canola	cytosol	51.14	53.87
VIT_03s0038g03680.t01	Wine grape	cytosol	54.64	53.79
Bra009657.1-P	Field mustard	cytosol	51.84	53.62
KRH07920	Soybean	cytosol	50.79	53.6
CDX75489	Canola	cytosol	48.16	53.29
CDY07870	Canola	cytosol	50.09	53.16
KRH69678	Soybean	nucleus	50.61	53.03
Bra037281.1-P	Field mustard	cytosol	50.26	52.95
CDY47488	Canola	cytosol	48.51	52.76
CDX71349	Canola	cytosol	50.44	52.55
Bra011602.1-P	Field mustard	cytosol	40.81	50.98
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	43.43	48.06
KRH07807	Soybean	cytosol, mitochondrion, nucleus	5.6	47.76
PGSC0003DMT400045106	Potato	cytosol	37.3	45.91
Solyc02g060600.1.1	Tomato	cytosol	21.89	44.48
Solyc02g060580.1.1	Tomato	cytosol	22.94	42.81
Solyc02g061670.1.1	Tomato	cytosol	25.74	41.88
Solyc02g061720.1.1	Tomato	cytosol	23.99	40.53
Solyc02g061680.1.1	Tomato	cytosol	32.92	38.92
Solyc02g061710.1.1	Tomato	nucleus	16.46	38.37
PGSC0003DMT400048093	Potato	extracellular	5.43	38.27
Solyc02g061610.1.1	Tomato	cytosol	32.92	37.75
Solyc02g060590.1.1	Tomato	cytosol	8.41	35.82
Solyc02g061640.1.1	Tomato	cytosol	8.41	35.82
GSMUA_Achr1P02760_001	Banana	cytosol	7.53	33.33
CDX69126	Canola	nucleus	40.81	32.32
Solyc02g060570.1.1	Tomato	cytosol	33.8	27.22

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	UniProt:A0A287FKJ0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G052260	EnsemblPlants:HORVU1Hr1G052260.2	InterPro:IPR000626	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00213	SMART:SM00727
SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA-like_sf	UniParc:UPI000B483F30	InterPro:Ubiquilin
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:387545415..387549622

Molecular Weight (calculated)

59057.1 Da

IEP (calculated)

4.438

GRAVY (calculated)

-0.356

Length

571 amino acids

Sequence
(BLAST)

001: PDRATAEGMA GAGDGEGAGS ESPPPGARAT LNIRCANGAK FTLQADLGET VGAFKEAVAA SSDVPAPQQR LIYKGRILKD EQTLESYGVE TDHTIHLVRG
101: VAQPAASGAP AAASPQASTT PTSGPAGGLG GLFPGLGATG AASGRPAGLF GAGLPELDQM QQQLSQNPNL MREIMNMPMM QNLMNNPDLI RNMIMNNPQM
201: RDIIDRNPDL AHVLNDPSVL RQTLEAARNP EIMREMMRNT DRAMSNIEAS PEGFNMLRRM YETVQEPFLN ATTMGGGGEG TPASNPFAAL LGNQGPNQPG
301: NPATNAPTTG PESTTGTPVP NTNPLPNPWS TNAGGAQGTT RPGPAASTRA GSTGGLGGLG SADLSSLLGG LGGNARTGAA GGLGGLGSAD LGSMLGGPPD
401: ATLLSQMLQN PAMMQMMQNI MSDPQSMNQL LSMNPNARSL MESNPQLRDM FQNPEFLRQM ASPEALQQLL SFQQTLSSQL GQNQPSQAGN LGGNGTGARG
501: NVGLDTLMGM LSGLGAGGGL GVPNTSNVPP EELYATQLGQ LQEMGFFDTA ENIRFWPVDK TSQMLPVISL F

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.