Factsheet for GSMUA_Achr5P11110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr2P19900_001
GSMUA_Achr4P25580_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT1G79810.1	23336935
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G17200.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT2G17200.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	63.23	74.07
KRH07807	Soybean	cytosol, mitochondrion, nucleus	8.44	67.16
Os03t0131300-01	Rice	plasma membrane	63.23	63.11
EER92919	Sorghum	cytosol	62.66	62.08
Zm00001d048343_P001	Maize	cytosol	61.16	61.16
TraesCS4B01G325900.2	Wheat	cytosol	60.79	60.9
Zm00001d027514_P002	Maize	cytosol	61.16	60.82
PGSC0003DMT400048093	Potato	extracellular	9.19	60.49
HORVU4Hr1G082050.15	Barley	cytosol	60.23	60.11
PGSC0003DMT400003987	Potato	cytosol	62.1	59.96
Solyc02g082800.2.1	Tomato	plastid	61.91	59.67
GSMUA_Achr1P14990_001	Banana	cytosol	61.91	59.57
Os10t0542200-01	Rice	plasma membrane, plastid	64.17	59.48
TraesCS1D01G206500.1	Wheat	cytosol	62.85	59.4
TraesCS1B01G217000.1	Wheat	cytosol	63.04	59.15
KRH07920	Soybean	cytosol	59.47	58.6
TraesCS1A01G203000.1	Wheat	cytosol	62.29	58.45
EER92003	Sorghum	cytosol	63.41	58.28
VIT_03s0038g03680.t01	Wine grape	cytosol	63.41	58.28
GSMUA_Achr3P00530_001	Banana	cytosol	60.41	58.23
Solyc03g032160.2.1	Tomato	plastid	60.41	57.81
KRH69678	Soybean	nucleus	58.91	57.61
KRH76549	Soybean	cytosol	58.35	57.49
AT2G17190.1	Thale cress	cytosol	57.97	57.43
Zm00001d047373_P001	Maize	cytosol	61.54	56.94
KRH28904	Soybean	cytosol	57.79	56.93
CDY31374	Canola	cytosol, plastid	56.66	56.34
GSMUA_Achr7P04060_001	Banana	cytosol	57.41	56.15
CDX88001	Canola	cytosol	57.04	56.09
CDY26796	Canola	cytosol	55.53	55.95
CDX71349	Canola	cytosol	57.41	55.84
AT2G17200.1	Thale cress	cytosol	57.6	55.72
HORVU1Hr1G052260.2	Barley	cytosol	59.66	55.69
TraesCS4D01G322800.1	Wheat	cytosol	59.29	55.63
TraesCS5A01G498100.1	Wheat	cytosol	59.29	55.63
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	53.85	55.62
CDY47488	Canola	cytosol	54.78	55.62
Zm00001d029782_P004	Maize	cytosol	61.73	55.48
CDY07870	Canola	cytosol	55.91	55.39
Bra002028.1-P	Field mustard	cytosol, plastid	57.04	55.27
Bra037281.1-P	Field mustard	cytosol	56.1	55.17
Bra009657.1-P	Field mustard	cytosol	56.29	54.35
CDX75489	Canola	cytosol	52.35	54.07
Bra011602.1-P	Field mustard	cytosol	44.65	52.08
PGSC0003DMT400045106	Potato	cytosol	40.71	46.77
Solyc02g060600.1.1	Tomato	cytosol	23.26	44.13
Solyc02g061720.1.1	Tomato	cytosol	27.39	43.2
GSMUA_Achr1P02760_001	Banana	cytosol	10.32	42.64
Solyc02g060580.1.1	Tomato	cytosol	24.2	42.16
Solyc02g061670.1.1	Tomato	cytosol	27.58	41.88
Solyc02g060590.1.1	Tomato	cytosol	10.13	40.3
Solyc02g061680.1.1	Tomato	cytosol	36.21	39.96
Solyc02g061710.1.1	Tomato	nucleus	17.82	38.78
Solyc02g061610.1.1	Tomato	cytosol	35.83	38.35
Solyc02g061640.1.1	Tomato	cytosol	9.57	38.06
CDX69126	Canola	nucleus	46.15	34.12
Solyc02g060570.1.1	Tomato	cytosol	37.52	28.21

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G11110_001	EnsemblPlants:GSMUA_Achr5P11110_001	EnsemblPlants:GSMUA_Achr5T11110_001	InterPro:IPR000626	InterPro:IPR015940
UniProt:M0SXJ0	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677
PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236
InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000295B6DD	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

Putative Ubiquilin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G11110_001]

Coordinates

chr5:-:7997989..8004736

Molecular Weight (calculated)

56641.7 Da

IEP (calculated)

4.309

GRAVY (calculated)

-0.374

Length

533 amino acids

Sequence
(BLAST)

001: MAANCDSAEA GGGPPAVTVH VRCTDGSKIS VRTALDSTVG AFKAVVAGSS DVPAEQQRLI YKGRILKDDQ TLVSYGVESD HTIHLVRAAA PSATSANTAV
101: GNQGASVTSN SNSASGFGGS LFPGMSVNGD AGSETASLFG TGIPELDQMQ QQLAQNPNIM TEIMNMPAIQ NIINNPDIIQ NLFMNNPQLR EIIDRNPDLA
201: HVLNDPSTLR QTMEAARNPE LMREMMRNTD RAMSNIESSP EGFNMLRRMY ETVQEPFLNA TTMGGDLGGD AGSNPFAALL GSQAAAQGRE RSINSTTGSE
301: PTTGSAPNTD PLPNPWGTNT GGPQPVNTSS NPASTPGAPV LNGLGSLDLE NMVGRMQDSS VLSQVLQNPA MMQMMQNLLS DPQYVNQVLN FNPNMRSLLE
401: SNGQLREMLQ NPDFLRQLMS PETMQQLLSI QQSLFSHNGQ QQSRLEQEQT AGGTGTLNNT GLEFLMNMFG GLGTGGLGVP PTSNVPAEEL YATQLSQLQE
501: MGFFDTQENI RALTATAGNV HAAVERLLGN PGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.