Factsheet for GSMUA_Achr2P11290_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02760_001
GSMUA_Achr1P02770_001
GSMUA_Achr1P14990_001
GSMUA_Achr1P25580_001
GSMUA_Achr3P00530_001
GSMUA_Achr4P20500_001
GSMUA_Achr5P11110_001
GSMUA_Achr7P04060_001
GSMUA_Achr7P05120_001
GSMUA_Achr7P05130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	GSMUA_Achr1P25580_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr4P20500_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr7P05120_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr7P05130_001	AT1G16190.1	20059542
AT4G38630.1	GSMUA_Achr1P02760_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr1P02770_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr1P14990_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr3P00530_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr5P11110_001	AT2G17200.1	20059542
AT4G38630.1	GSMUA_Achr7P04060_001	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25580_001	Banana	cytosol	89.26	87.25
KRH69766	Soybean	cytosol	75.45	72.84
KRH08049	Soybean	cytosol	73.91	72.61
KRH76642	Soybean	cytosol	74.94	72.35
KRH28809	Soybean	nucleus	74.42	71.85
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	73.66	71.46
PGSC0003DMT400009215	Potato	cytosol	73.66	71.46
TraesCS4A01G071300.2	Wheat	cytosol	68.8	67.08
TraesCS4D01G227900.2	Wheat	cytosol	68.8	67.08
TraesCS4B01G227200.2	Wheat	cytosol	69.05	66.83
EER92569	Sorghum	cytosol	68.29	66.58
Os03t0243300-01	Rice	plasma membrane	68.03	66.17
GSMUA_Achr11P...	Banana	golgi, vacuole	77.49	65.58
CDY12093	Canola	cytosol	60.61	62.86
CDY22415	Canola	cytosol	60.1	62.67
CDX90286	Canola	cytosol, nucleus, plastid	60.36	62.6
CDX72742	Canola	extracellular	58.82	61.66
Bra010735.1-P	Field mustard	cytosol	60.36	61.62
Bra033573.1-P	Field mustard	cytosol	59.85	61.42
AT4G38630.1	Thale cress	cytosol	60.61	61.4
Zm00001d028396_P001	Maize	nucleus	66.5	57.52
Zm00001d047941_P001	Maize	cytosol	64.71	56.22
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	68.29	54.27
Solyc03g033430.1.1	Tomato	cytosol	22.25	51.18
PGSC0003DMT400058116	Potato	cytosol	55.75	51.17
Zm00001d024336_P001	Maize	mitochondrion	11.76	48.42
VIT_04s0008g00060.t01	Wine grape	nucleus	10.49	39.81
Zm00001d040834_P001	Maize	plastid	17.39	34.17

Protein Annotations

EnsemblPlants:GSMUA_Achr2P11290_001	EnsemblPlants:GSMUA_Achr2T11290_001	EnsemblPlantsGene:GSMUA_Achr2G11290_001	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR003903
InterPro:IPR036465	InterPro:UIM_dom	InterPro:VWF_A	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10223
PANTHER:PTHR10223:SF5	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	SEG:seg
SMART:SM00726	SUPFAM:SSF53300	UniParc:UPI000296F021	UniProt:M0S720	MapMan:19.2.6.2.2.9	:

Description

26S proteasome non-ATPase regulatory subunit 4 [Source:GMGC_GENE;Acc:GSMUA_Achr2G11290_001]

Coordinates

chr2:+:14215592..14219915

Molecular Weight (calculated)

41153.0 Da

IEP (calculated)

4.413

GRAVY (calculated)

-0.389

Length

391 amino acids

Sequence
(BLAST)

001: MRNGDYSPSR FQAQADAINL ICGAKTQSNP ENTVGVLTMA GKGVRVLVTP TSDLGKILAC LHGLDFGCEM NLTAGIQVAQ LALKHRQNKK QKQRIIVFAG
101: SPITYEKKTL EAIGRKLKKN SVALDVVDFG ESDDGKAEKL ETLVAAVNNN DNSHIVHVSP GPNALSDVLI STPIFSGDGE GGSGFAAAAA AASAGGVSGF
201: DFGVDPNLDP ELALALRISM EEERARQEAA AKKAAEEASK EEKGGEQASS SRDTTMSEAV NTSAVIADDK RQNLTDVEAA LLEQALAMSM DGAKSSSVDM
301: IDADMSDATA EDPELAYALK MSVQESAGDS STHSGMSKVL EDQSFVSSVL NSLPGVDPND PSLKDFLASL QDQSETQQKR KEDSPEKDGD K

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.