Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92569 | Sorghum | cytosol | 81.11 | 91.02 |
| Os03t0243300-01 | Rice | plasma membrane | 74.0 | 82.84 |
| TraesCS4D01G227900.2 | Wheat | cytosol | 71.11 | 79.8 |
| TraesCS4A01G071300.2 | Wheat | cytosol | 71.11 | 79.8 |
| TraesCS4B01G227200.2 | Wheat | cytosol | 71.56 | 79.7 |
| Zm00001d028396_P001 | Maize | nucleus | 77.56 | 77.21 |
| GSMUA_Achr4P25580_001 | Banana | cytosol | 60.0 | 67.5 |
| KRH28809 | Soybean | nucleus | 60.22 | 66.91 |
| KRH76642 | Soybean | cytosol | 60.22 | 66.91 |
| Solyc02g083710.2.1 | Tomato | endoplasmic reticulum, extracellular | 59.56 | 66.5 |
| PGSC0003DMT400009215 | Potato | cytosol | 59.56 | 66.5 |
| KRH69766 | Soybean | cytosol | 59.33 | 65.93 |
| Zm00001d024336_P001 | Maize | mitochondrion | 13.78 | 65.26 |
| HORVU4Hr1G063820.1 | Barley | cytosol, mitochondrion, nucleus | 70.89 | 64.84 |
| GSMUA_Achr2P11290_001 | Banana | cytosol, nucleus, plastid | 56.22 | 64.71 |
| KRH08049 | Soybean | cytosol | 56.67 | 64.07 |
| Bra010735.1-P | Field mustard | cytosol | 52.22 | 61.36 |
| AT4G38630.1 | Thale cress | cytosol | 52.22 | 60.88 |
| CDX90286 | Canola | cytosol, nucleus, plastid | 50.89 | 60.74 |
| CDY12093 | Canola | cytosol | 50.67 | 60.48 |
| Bra033573.1-P | Field mustard | cytosol | 50.89 | 60.1 |
| CDY22415 | Canola | cytosol | 49.78 | 59.73 |
| CDX72742 | Canola | extracellular | 49.33 | 59.52 |
| GSMUA_Achr11P... | Banana | golgi, vacuole | 60.67 | 59.09 |
| Zm00001d030290_P001 | Maize | cytosol | 42.89 | 55.78 |
| Solyc03g033430.1.1 | Tomato | cytosol | 17.78 | 47.06 |
| PGSC0003DMT400058116 | Potato | cytosol | 44.0 | 46.48 |
| Zm00001d040834_P001 | Maize | plastid | 19.33 | 43.72 |
| VIT_04s0008g00060.t01 | Wine grape | nucleus | 6.22 | 27.18 |
Protein Annotations
| EntrezGene:100283637 | MapMan:19.2.6.2.2.9 | Gene3D:3.40.50.410 | UniProt:A0A1D6PF20 | ProteinID:AQL08122.1 | GO:GO:0000502 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | InterPro:IPR002035 | InterPro:IPR003903 | InterPro:IPR036465 |
| PFAM:PF02809 | PFAM:PF13519 | PFscan:PS50234 | PFscan:PS50330 | PANTHER:PTHR10223 | PANTHER:PTHR10223:SF5 |
| SMART:SM00327 | SMART:SM00726 | SUPFAM:SSF53300 | InterPro:UIM_dom | UniParc:UPI0008437876 | InterPro:VWF_A |
| EnsemblPlantsGene:Zm00001d047941 | EnsemblPlants:Zm00001d047941_P001 | EnsemblPlants:Zm00001d047941_T001 | SEG:seg | InterPro:vWFA_dom_sf | : |
Description
26S proteasome non-ATPase regulatory subunit 4
Coordinates
chr9:+:145890819..145895164
Molecular Weight (calculated)
48151.1 Da
IEP (calculated)
4.358
GRAVY (calculated)
-0.098
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLEATMICI DNSEWMRNGD YAPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH
101: RQNKRQQQRI IAFIGSPVKY DKKILETIGK KLKKNNVALD IVDFGESDDE KPEKLEALIA AVNSSDSSHI VHVPPGENAL SDVLLSTPIF TGEEGGSGFA
201: ASAAAAVATG ASGFEFGVDP NVDPELALAL RLSMEEERAR QEAIAKKAAE DTSNTENINA SSSNSDSVMA EAELASNAAA GDKQEQPKDD DDLLQQALAM
301: SMEGGASGSA AVTDSAMAEA GAVDPDLALA LQMSVQDANM SSDTDMSKVF EDRTFVSSIL NSVCIILKLM AYRIAYGVLY VPQAQLILWN GNSRTLSGES
401: TQIPYTKQVL SQIVVYPFVV WIHWFGENEI CPKQQNPVHM NCYPVFTNLD
101: RQNKRQQQRI IAFIGSPVKY DKKILETIGK KLKKNNVALD IVDFGESDDE KPEKLEALIA AVNSSDSSHI VHVPPGENAL SDVLLSTPIF TGEEGGSGFA
201: ASAAAAVATG ASGFEFGVDP NVDPELALAL RLSMEEERAR QEAIAKKAAE DTSNTENINA SSSNSDSVMA EAELASNAAA GDKQEQPKDD DDLLQQALAM
301: SMEGGASGSA AVTDSAMAEA GAVDPDLALA LQMSVQDANM SSDTDMSKVF EDRTFVSSIL NSVCIILKLM AYRIAYGVLY VPQAQLILWN GNSRTLSGES
401: TQIPYTKQVL SQIVVYPFVV WIHWFGENEI CPKQQNPVHM NCYPVFTNLD
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
Arabidopsis Description
RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.