CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09619
KRH23694
KRH44654
KRH47002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	KRH09619	AT1G16190.1	20059542
AT4G38630.1	KRH23694	AT1G16190.1	20059542
AT4G38630.1	KRH44654	AT1G16190.1	20059542
AT4G38630.1	KRH47002	AT1G16190.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76642	Soybean	cytosol	97.28	97.28
KRH69766	Soybean	cytosol	90.62	90.62
KRH08049	Soybean	cytosol	87.65	89.2
VIT_04s0023g03620.t01	Wine grape	cytosol	84.44	84.65
PGSC0003DMT400009215	Potato	cytosol	83.21	83.62
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	82.72	83.13
GSMUA_Achr4P25580_001	Banana	cytosol	75.8	76.75
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	71.85	74.42
EER92569	Sorghum	cytosol	71.6	72.32
Os03t0243300-01	Rice	plasma membrane	71.11	71.64
TraesCS4D01G227900.2	Wheat	cytosol	70.12	70.82
TraesCS4A01G071300.2	Wheat	cytosol	70.12	70.82
TraesCS4B01G227200.2	Wheat	cytosol	69.88	70.05
Bra010735.1-P	Field mustard	cytosol	65.19	68.93
CDY12093	Canola	cytosol	63.95	68.7
CDX90286	Canola	cytosol, nucleus, plastid	63.7	68.44
Bra033573.1-P	Field mustard	cytosol	64.2	68.24
AT4G38630.1	Thale cress	cytosol	64.94	68.13
CDY22415	Canola	cytosol	62.96	68.0
CDX72742	Canola	extracellular	62.22	67.56
GSMUA_Achr11P...	Banana	golgi, vacuole	72.84	63.85
Zm00001d028396_P001	Maize	nucleus	68.4	61.28
Zm00001d047941_P001	Maize	cytosol	66.91	60.22
PGSC0003DMT400058116	Potato	cytosol	63.21	60.09
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	70.37	57.93
Solyc03g033430.1.1	Tomato	cytosol	23.21	55.29
Zm00001d024336_P001	Maize	mitochondrion	12.35	52.63
Zm00001d040834_P001	Maize	plastid	18.02	36.68

Protein Annotations

MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	EMBL:ACUP02006765	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G078100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031593	GO:GO:0043161	GO:GO:0043248
UniProt:I1LI24	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	EnsemblPlants:KRH28809	ProteinID:KRH28809
ProteinID:KRH28809.1	PFAM:PF02809	PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223
PANTHER:PTHR10223:SF5	SMART:SM00327	SMART:SM00726	SUPFAM:SSF53300	InterPro:UIM_dom	UniParc:UPI000233D82D
InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:5877078..5883528

Molecular Weight (calculated)

42894.3 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.389

Length

405 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRFQAQA DAVNLICGAK TQSNPENTVG VLTMAGKGVR VLVTPTSDLG KILACMHGLD IGGEMNLAAG IQVAQLALKH
101: RQNKKQQQRI IVFAGSPVKH EKKMLEMIGR KLKKNSVALD IVNFGEEDEG KTEKLEALLA AVNNNDTSHI VHVPSGPNAL SDVLISTPIF TGDGEGGSGF
201: AAAAATAAAG GVSGFEFGVD PNLDPELALA LRVSMEEERA RQEAAAKKAA EDAANLEKGD EQQASSQHAT MTERAGAATS EAENKTSDLM DDENALLQQA
301: LAMSMDDSAI SHDVKDTDMS EASASDPDLA LALQLSITDS AKDQSSQSDM SKLLADQSFV SSILASLPGV DPNDPSVKDL LASMQNQSEP QQKNDDKPSN
401: EEEKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.