CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92003
EER92919
EES04633

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	EES04633	AT1G16190.1	20059542
AT4G38630.1	EER92003	AT2G17200.1	20059542
AT4G38630.1	EER92919	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0243300-01	Rice	plasma membrane	90.52	90.3
TraesCS4D01G227900.2	Wheat	cytosol	85.79	85.79
TraesCS4A01G071300.2	Wheat	cytosol	85.54	85.54
TraesCS4B01G227200.2	Wheat	cytosol	86.03	85.4
Zm00001d028396_P001	Maize	nucleus	91.52	81.19
Zm00001d047941_P001	Maize	cytosol	91.02	81.11
Zm00001d024336_P001	Maize	mitochondrion	17.71	74.74
GSMUA_Achr4P25580_001	Banana	cytosol	71.82	72.0
KRH76642	Soybean	cytosol	72.32	71.6
KRH28809	Soybean	nucleus	72.32	71.6
PGSC0003DMT400009215	Potato	cytosol	71.82	71.46
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	71.57	71.22
KRH69766	Soybean	cytosol	71.32	70.62
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	85.54	69.72
KRH08049	Soybean	cytosol	68.58	69.1
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	66.58	68.29
AT4G38630.1	Thale cress	cytosol	63.59	66.06
Bra010735.1-P	Field mustard	cytosol	63.09	66.06
CDX90286	Canola	cytosol, nucleus, plastid	61.6	65.52
CDY12093	Canola	cytosol	61.35	65.25
Bra033573.1-P	Field mustard	cytosol	61.85	65.09
CDY22415	Canola	cytosol	60.6	64.8
CDX72742	Canola	extracellular	60.1	64.61
GSMUA_Achr11P...	Banana	golgi, vacuole	71.57	62.12
Zm00001d040834_P001	Maize	plastid	25.69	51.76
PGSC0003DMT400058116	Potato	cytosol	53.62	50.47
EER91744	Sorghum	mitochondrion	50.12	50.25
Solyc03g033430.1.1	Tomato	cytosol	19.95	47.06
VIT_04s0008g00060.t01	Wine grape	nucleus	9.98	38.84

Protein Annotations

MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	EntrezGene:8078860	UniProt:C5WR06	EnsemblPlants:EER92569	ProteinID:EER92569
ProteinID:EER92569.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008540	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031593
GO:GO:0043161	GO:GO:0043248	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	PFAM:PF02809
PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327
SMART:SM00726	EnsemblPlantsGene:SORBI_3001G439600	SUPFAM:SSF53300	unigene:Sbi.1003	InterPro:UIM_dom	UniParc:UPI0001A82727
InterPro:VWF_A	RefSeq:XP_002465571.1	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr1:+:71761103..71766172

Molecular Weight (calculated)

42198.2 Da

IEP (calculated)

4.236

GRAVY (calculated)

-0.357

Length

401 amino acids

Sequence
(BLAST)

001: MVLEATMICI DNSEWMRNGD YAPSRFQAQA DAVNLICGAK TQSNPENTVG VMTMAGKGVR VLVTPTSDLG KILACMHGLE VGAEANLAAA IQVAQLALKH
101: RQNKRQQQRI IAFIGSPVKY DKKVLETIGK KLKKNNVALD IVDFGESDDE KPEKLEALIA AVNSSDSSHI VHVPPGDNAL SDVLLSTPIF TGEEGGSGFA
201: ASAAAAAATG ASGFEFGVDP NVDPELALAL RLSMEEERAR QEAIAKKAAE DTSNTENNNA SSSNSDSVMA EAEPASNAAA GDKKEQPKDD DDLLQQALAM
301: SMEGGASGSA AVTDSAMAEA GAVDPDLALA LQMSVQDANM SSDTDMSKVF EDRTFVSSIL NSLPGVDPND PSVKDLLASL HSQGEQEKKE DKSDKTEDEK
401: N

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.