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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • nucleus 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030290_P001 Maize cytosol 61.5 71.1
EER92569 Sorghum cytosol 50.25 50.12
Os10t0141400-00 Rice cytosol 35.5 43.83
CDX94347 Canola cytosol 14.5 32.4
Protein Annotations
MapMan:19.2.6.2.2.9Gene3D:3.40.50.410UniProt:C5WP38ncoils:CoilEnsemblPlants:EER91744ProteinID:EER91744
ProteinID:EER91744.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006511GO:GO:0008150
GO:GO:0008152GO:GO:0008540GO:GO:0009056GO:GO:0009987GO:GO:0019538InterPro:IPR002035
InterPro:IPR003903InterPro:IPR036465PFAM:PF13519PFscan:PS50234PFscan:PS50330PANTHER:PTHR10223
PANTHER:PTHR10223:SF5SMART:SM00327EnsemblPlantsGene:SORBI_3001G268400SUPFAM:SSF53300InterPro:UIM_domUniParc:UPI00081ACEE5
InterPro:VWF_ASEG:segInterPro:vWFA_dom_sf:::
Description
hypothetical protein
Coordinates
chr1:+:51320948..51325547
Molecular Weight (calculated)
43294.7 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.575
Length
400 amino acids
Sequence
(BLAST)
001: MPARLRERTT RFTAAPLLPP PPATTMVLEA TMICVDNSEW MRNGDYPPSR FKAQADAFAI LCAAKTQAKE STAGVLAMAG AGKGVSVLVT LTNDFSKVLS
101: SINGLQIGGE ANLIAAIRVA QLALKNRKNK QLQQRIIVFV GSPVKDEKSS LEVLGKTLKK NNVALDVVDF GESDDEKPEK LEALVAAVNS GGNSHIIHIP
201: AGGVLSDEIF SSPILSEDPG SDSAAAASGA SSFKFGVDRE LALALQISME EERARQEAAA KKAREESSKT GSEGQSSTSN GDTVMADTEP EANSYTEDEK
301: LLHMDEDEIL RQAEEISIED FRCDEQLEGV TDEATSALQT TFQEEETGTQ SDASKVFGNQ PFAQSVQPRR PPKKYRRHSK KKPEKKHEKK EDEPEGDKSQ
Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
Arabidopsis Description
RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.