Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90286 | Canola | cytosol, nucleus, plastid | 43.58 | 20.69 |
| CDY12093 | Canola | cytosol | 43.58 | 20.69 |
| CDX72742 | Canola | extracellular | 43.02 | 20.64 |
| CDY22415 | Canola | cytosol | 40.78 | 19.47 |
| Os10t0141400-00 | Rice | cytosol | 32.96 | 18.21 |
| Zm00001d030290_P001 | Maize | cytosol | 32.4 | 16.76 |
| EER91744 | Sorghum | mitochondrion | 32.4 | 14.5 |
Protein Annotations
| EnsemblPlants:CDX94347 | EnsemblPlantsGene:GSBRNA2T00157459001 | Gene3D:3.40.50.410 | GO:A0A078DZJ9 | InterPro:IPR036465 | InterPro:vWFA_dom_sf |
| PANTHER:PTHR10223 | PANTHER:PTHR10223:SF5 | ProteinID:CDX94347 | ProteinID:CDX94347.1 | UniParc:UPI0004EBE17B | MapMan:35.1 |
Description
BnaC01g18370D
Coordinates
chrLK031881:+:382863..384203
Molecular Weight (calculated)
19963.0 Da
IEP (calculated)
8.059
GRAVY (calculated)
-0.325
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYIDNFELM RDRDYRLKPK LSIFSAGIFR ALPLQSNLEN TVGILRMADW SGVDHEDLKS INIISKSKEE PSLAPGTCKT VTPRINSQRI IVLAVSPIKY
101: KKKCLRGCWE KAQKEGVSLG IVNFGEENNE EKPQKLEPLL SAVNSNNGSH IVHVPSEAND FSMSFSYILN GTGQPLDLG
101: KKKCLRGCWE KAQKEGVSLG IVNFGEENNE EKPQKLEPLL SAVNSNNGSH IVHVPSEAND FSMSFSYILN GTGQPLDLG
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
Arabidopsis Description
RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.