CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71349
CDX81753
CDX88001
CDY07870
CDY26796
CDY31374
CDY33351
CDY35071
CDY47488
CDY52848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38630.1	CDX81753	AT1G16190.1	20059542
AT4G38630.1	CDY33351	AT1G16190.1	20059542
AT4G38630.1	CDY35071	AT1G16190.1	20059542
AT4G38630.1	CDY52848	AT1G16190.1	20059542
AT4G38630.1	CDX71349	AT2G17200.1	20059542
AT4G38630.1	CDX88001	AT2G17200.1	20059542
AT4G38630.1	CDY07870	AT2G17200.1	20059542
AT4G38630.1	CDY26796	AT2G17200.1	20059542
AT4G38630.1	CDY31374	AT2G17200.1	20059542
AT4G38630.1	CDY47488	AT2G17200.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22415	Canola	cytosol	96.78	96.27
CDY12093	Canola	cytosol	95.17	94.16
CDX90286	Canola	cytosol, nucleus, plastid	94.91	93.9
AT4G38630.1	Thale cress	cytosol	93.83	90.67
VIT_04s0023g03620.t01	Wine grape	cytosol	67.56	62.38
KRH76642	Soybean	cytosol	67.56	62.22
KRH28809	Soybean	nucleus	67.56	62.22
PGSC0003DMT400009215	Potato	cytosol	66.76	61.79
KRH69766	Soybean	cytosol	67.02	61.73
KRH08049	Soybean	cytosol	65.68	61.56
Solyc02g083710.2.1	Tomato	endoplasmic reticulum, extracellular	66.49	61.54
Os03t0243300-01	Rice	plasma membrane	65.68	60.95
GSMUA_Achr4P25580_001	Banana	cytosol	65.15	60.75
EER92569	Sorghum	cytosol	64.61	60.1
TraesCS4D01G227900.2	Wheat	cytosol	64.61	60.1
TraesCS4B01G227200.2	Wheat	cytosol	64.61	59.65
TraesCS4A01G071300.2	Wheat	cytosol	64.08	59.6
GSMUA_Achr2P11290_001	Banana	cytosol, nucleus, plastid	61.66	58.82
GSMUA_Achr11P...	Banana	golgi, vacuole	63.54	51.3
Zm00001d028396_P001	Maize	nucleus	61.39	50.66
Zm00001d047941_P001	Maize	cytosol	59.52	49.33
HORVU4Hr1G063820.1	Barley	cytosol, mitochondrion, nucleus	64.08	48.58
Solyc03g033430.1.1	Tomato	cytosol	21.18	46.47
PGSC0003DMT400058116	Potato	cytosol	52.81	46.24
CDX94347	Canola	cytosol	20.64	43.02
Zm00001d024336_P001	Maize	mitochondrion	9.92	38.95
VIT_04s0008g00060.t01	Wine grape	nucleus	9.12	33.01
Zm00001d040834_P001	Maize	plastid	13.94	26.13

Protein Annotations

MapMan:19.2.6.2.2.9	Gene3D:3.40.50.410	GO:A0A078C7A7	EnsemblPlants:CDX72742	ProteinID:CDX72742	ProteinID:CDX72742.1
ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00100341001	InterPro:IPR002035	InterPro:IPR003903	InterPro:IPR036465	PFAM:PF02809
PFAM:PF13519	PFscan:PS50234	PFscan:PS50330	PANTHER:PTHR10223	PANTHER:PTHR10223:SF5	SMART:SM00327
SMART:SM00726	SUPFAM:SSF53300	InterPro:UIM_dom	UniParc:UPI0004EEC114	InterPro:VWF_A	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

BnaC07g47640D

Coordinates

chrLK031796:+:2901371..2903672

Molecular Weight (calculated)

39435.1 Da

IEP (calculated)

4.218

GRAVY (calculated)

-0.374

Length

373 amino acids

Sequence
(BLAST)

001: MICIDNSEWM RNGDYSPSRL QAQTEAVNLL CGAKTQSNPE NTVGILTMAG KGVRVLTTPT SDLGKILACM HGLDVGGEIN LTAAIQIAQL ALKHRQNKNQ
101: RQRIIVFAGS PIKYEKKALE VVGKRLKKNS VSLDIVNFGE DDDQDKPLKL EALLSAVNNN DGSHIVHVPS AANALSDVLL STPVFTGDEG AAGYVSAAAA
201: AGGDFDFGVD PNIDPELALA LRVSMEEERA RQEAAAKKAA DEAGQKDQDG ASASQETVAR TTEKNAEPMD EDNALLNQAI AMSVGDVNMS EAANEDQDLA
301: LALQMSMSGE ESNEAMGAGN LLGDQAFISS VLSSLPGVDP NDPAVQALLA SLPDESKRNE EEESSSKGED EKK

Best Arabidopsis Sequence Match ( AT4G38630.1 )
(BLAST)

001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK

Arabidopsis Description

RPN10RPN10 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.