CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67927
CDX72742
CDX79411
CDX90286
CDX97722
CDY12093
CDY22415
CDY30135
CDY70404

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	CDX67927	AT1G79810.1	23336935
AT2G17190.1	CDX79411	AT1G79810.1	23336935
AT2G17190.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX67927	AT1G79810.1	23336935
AT2G17200.1	CDX79411	AT1G79810.1	23336935
AT2G17200.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX97722	AT3G16120.1	21798944
AT2G17200.1	CDY30135	AT3G16120.1	21798944
AT2G17200.1	CDX72742	AT4G38630.1	20059542
AT2G17200.1	CDX90286	AT4G38630.1	20059542
AT2G17200.1	CDY12093	AT4G38630.1	20059542
AT2G17200.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009657.1-P	Field mustard	cytosol	97.6	95.83
CDY07870	Canola	cytosol	94.1	94.8
CDY31374	Canola	cytosol, plastid	84.13	85.07
CDX71349	Canola	cytosol	85.61	84.67
AT2G17190.1	Thale cress	cytosol	81.37	81.97
CDY26796	Canola	cytosol	79.15	81.1
CDY47488	Canola	cytosol	77.86	80.38
AT2G17200.1	Thale cress	cytosol	80.44	79.13
CDX75489	Canola	cytosol	66.61	69.96
VIT_03s0038g03680.t01	Wine grape	cytosol	64.02	59.83
TraesCS4B01G325900.2	Wheat	cytosol	56.27	57.33
HORVU4Hr1G082050.15	Barley	cytosol	56.27	57.12
GSMUA_Achr5P11110_001	Banana	cytosol	56.09	57.04
EER92919	Sorghum	cytosol	56.27	56.69
Zm00001d027514_P002	Maize	cytosol	55.72	56.34
Os03t0131300-01	Rice	plasma membrane	54.98	55.81
Zm00001d048343_P001	Maize	cytosol	54.8	55.72
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	46.68	55.6
TraesCS1D01G206500.1	Wheat	cytosol	57.01	54.79
GSMUA_Achr1P14990_001	Banana	cytosol	55.9	54.69
TraesCS1B01G217000.1	Wheat	cytosol	57.2	54.58
TraesCS1A01G203000.1	Wheat	cytosol	57.01	54.4
TraesCS4D01G322800.1	Wheat	cytosol	57.01	54.4
TraesCS5A01G498100.1	Wheat	cytosol	56.83	54.23
GSMUA_Achr3P00530_001	Banana	cytosol	54.98	53.89
Os10t0542200-01	Rice	plasma membrane, plastid	57.01	53.74
EER92003	Sorghum	cytosol	56.46	52.76
GSMUA_Achr7P04060_001	Banana	cytosol	52.4	52.11
Zm00001d047373_P001	Maize	cytosol	54.61	51.39
HORVU1Hr1G052260.2	Barley	cytosol	53.87	51.14
Zm00001d029782_P004	Maize	cytosol	55.17	50.42
CDX69126	Canola	nucleus	57.56	43.27
GSMUA_Achr1P02760_001	Banana	cytosol	8.86	37.21

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EnsemblPlants:CDX88001	ProteinID:CDX88001	ProteinID:CDX88001.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00147402001	InterPro:IPR000626	InterPro:IPR015940
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE03AC	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA06g25920D

Coordinates

chrLK031854:+:62485..65960

Molecular Weight (calculated)

57136.5 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.460

Length

542 amino acids

Sequence
(BLAST)

001: MGGEGDSSKP QTAGEGGDVV AVNVRCSNGS KFSVSTSLDS TVEAFKALVA QNSEVPANQQ RLIYKGRILK DDQTLLSYGL QADHTVHMVR GSAPASSPPP
101: SAPATTQATA PGVTRGVGSN DSSIPGLGFN PLGGGNAMSG LFGAGLPDLE QAQQQLAQNP NMIRDMMNQP AIQSLMNNPE FMRSMIMSNP QMRELVDRNP
201: ELGHVLNDPS ILRQTLEAAR NPELMREMMR NTDRAMSNIE SMPEGFNHLR RMYENVQEPL MNATTMPGNG GNNAASNPFA ALLGNQGVTT DAASNNSTTP
301: NAETGTGNGI PNANPLPNPW GATAGQTNAP GSTNSGGDAR STGLGGLGGL GGLGMLGADS PLGVTPDASQ LSQILQNPAM SQMMQSVLSN PQYMNQLMNL
401: NPQLRTMLDS NPQLREMMQN PDFLRQFSSP EMMQQMMTLQ QSLFSQNRNT TTQDPGQTGA AAAGAGNNAG LDLLMNMFGS LGAGGLGSTN QPNVPPEERF
501: ATQLQQLQEM GFYDRAENIR ALLATNGNVN AAVERLLGSI GQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.