Factsheet for VIT_03s0038g03680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00060.t01
VIT_04s0023g03620.t01
VIT_09s0002g04110.t01
VIT_09s0002g04280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	VIT_09s0002g04110.t01	AT1G79810.1	23336935
AT2G17200.1	VIT_09s0002g04110.t01	AT1G79810.1	23336935
AT2G17200.1	VIT_09s0002g04280.t01	AT3G16120.1	21798944
AT2G17200.1	VIT_04s0008g00060.t01	AT4G38630.1	20059542
AT2G17200.1	VIT_04s0023g03620.t01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	58.79	66.09
CDY26796	Canola	cytosol	59.48	65.22
CDY31374	Canola	cytosol, plastid	59.31	64.18
CDY07870	Canola	cytosol	59.48	64.13
CDX88001	Canola	cytosol	59.83	64.02
CDY47488	Canola	cytosol	57.93	64.0
AT2G17200.1	Thale cress	cytosol	60.69	63.88
CDX71349	Canola	cytosol	60.0	63.5
GSMUA_Achr5P11110_001	Banana	cytosol	58.28	63.41
CDX75489	Canola	cytosol	56.38	63.37
GSMUA_Achr1P14990_001	Banana	cytosol	60.52	63.36
Bra002028.1-P	Field mustard	cytosol, plastid	60.0	63.27
AT2G17190.1	Thale cress	cytosol	58.45	63.01
GSMUA_Achr3P00530_001	Banana	cytosol	60.0	62.93
Bra009657.1-P	Field mustard	cytosol	59.66	62.68
Bra037281.1-P	Field mustard	cytosol	58.45	62.55
Bra011602.1-P	Field mustard	cytosol	48.97	62.14
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	48.45	61.76
EER92919	Sorghum	cytosol	56.38	60.78
TraesCS4B01G325900.2	Wheat	cytosol	55.17	60.15
Os03t0131300-01	Rice	plasma membrane	55.34	60.11
Zm00001d027514_P002	Maize	cytosol	55.52	60.07
Zm00001d048343_P001	Maize	cytosol	54.83	59.66
GSMUA_Achr7P04060_001	Banana	cytosol	55.86	59.45
HORVU4Hr1G082050.15	Barley	cytosol	54.48	59.18
TraesCS1D01G206500.1	Wheat	cytosol	56.38	57.98
TraesCS1B01G217000.1	Wheat	cytosol	56.72	57.92
TraesCS1A01G203000.1	Wheat	cytosol	56.55	57.75
Os10t0542200-01	Rice	plasma membrane, plastid	56.21	56.7
TraesCS5A01G498100.1	Wheat	cytosol	55.0	56.16
EER92003	Sorghum	cytosol	56.03	56.03
TraesCS4D01G322800.1	Wheat	cytosol	54.83	55.99
Zm00001d047373_P001	Maize	cytosol	55.0	55.38
HORVU1Hr1G052260.2	Barley	cytosol	53.79	54.64
Zm00001d029782_P004	Maize	cytosol	55.69	54.47
CDX69126	Canola	nucleus	48.62	39.11
GSMUA_Achr1P02760_001	Banana	cytosol	8.28	37.21

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	EntrezGene:100267604	wikigene:100267604	MapMan:19.3.4.6	Gene3D:3.10.20.90
EMBL:AM477505	ProteinID:CAN59899	ProteinID:CAN59899.1	ProteinID:CCB60546	ProteinID:CCB60546.1	UniProt:F6I0T0
EMBL:FN596508	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940
EntrezGene:LOC100267604	wikigene:LOC100267604	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10677	PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00021085EB	InterPro:Ubiquilin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	ArrayExpress:VIT_03s0038g03680	EnsemblPlantsGene:VIT_03s0038g03680	EnsemblPlants:VIT_03s0038g03680.t01	unigene:Vvi.2218
RefSeq:XP_002282473	RefSeq:XP_002282473.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:2641531..2651725

Molecular Weight (calculated)

61678.4 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.362

Length

580 amino acids

Sequence
(BLAST)

001: MGDEGDSRDS SVGGEGVIVN IRCSNGSKFS VRTCLESTVG AFKALLAQNC DVPSDQQRLI YKGRILKDDQ TLESYGLQAD HTVHMVRGFA PAASTPATGG
101: TASATTAATA GSPLPPGSGV RQGASSDESG GIGAAGMRSP LFPGLGLGSL GGTGASGLFG AGFPEFEQVQ QQLTQNPNMM REIMNMPAIQ NLMNNPDLMR
201: SLIMNNPQMR EIIDRNPELA HILNDTGILR QTLEAARNPE LMREMMRNTD RAMSNIESSP EGFNMLRRMY ENVQEPFLNA TTMSGDSGNT LGSNPFAALL
301: GNQGGAQARD GSNNPSTTGA EATAGLTAPN TNPLPNPWSA GGAQTNNTAR SIPAGDARAP SVAGLGGLGL PEMERMLNGM PDATLFNQLL QNPAVSQMMQ
401: SLLSNPQYMN QILNFNPQLR GMLDMNPQLR EIMQNPELLR QLTSPETMQQ MMSLQQSLLS QLNRQQSTQE PGQTGGGTTG TPNNIGLDLL MNMFGGLGAG
501: SLNVPNTPDV PPEQLYATQL SQLQEMGFFD TQENIRALRA TSGNVHAAVE RLLGNPGVIQ KIQIMSSLQV DDLLATGLWT

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.