CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92569
EES06648
EES16336
KXG24014
KXG33416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	EES16336	AT1G79810.1	23336935
AT2G17190.1	KXG24014	AT1G79810.1	23336935
AT2G17200.1	EES16336	AT1G79810.1	23336935
AT2G17200.1	KXG24014	AT1G79810.1	23336935
AT2G17200.1	EES06648	AT3G16120.1	21798944
AT2G17200.1	KXG33416	AT3G16120.1	21798944
AT2G17200.1	EER92569	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027514_P002	Maize	cytosol	96.1	96.46
Zm00001d048343_P001	Maize	cytosol	92.19	93.06
Os03t0131300-01	Rice	plasma membrane	81.6	82.21
HORVU4Hr1G082050.15	Barley	cytosol	78.62	79.21
TraesCS4B01G325900.2	Wheat	cytosol	76.58	77.44
TraesCS5A01G498100.1	Wheat	cytosol	74.91	70.95
TraesCS4D01G322800.1	Wheat	cytosol	73.98	70.07
EER92003	Sorghum	cytosol	71.56	66.38
KRH07807	Soybean	cytosol, mitochondrion, nucleus	8.18	65.67
GSMUA_Achr5P11110_001	Banana	cytosol	62.08	62.66
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	50.74	60.0
PGSC0003DMT400048093	Potato	extracellular	8.92	59.26
PGSC0003DMT400003987	Potato	cytosol	59.29	57.79
Solyc03g032160.2.1	Tomato	plastid	59.67	57.63
Solyc02g082800.2.1	Tomato	plastid	58.36	56.78
VIT_03s0038g03680.t01	Wine grape	cytosol	60.78	56.38
KRH07920	Soybean	cytosol	56.69	56.38
CDX88001	Canola	cytosol	56.69	56.27
CDY31374	Canola	cytosol, plastid	55.95	56.16
CDY07870	Canola	cytosol	56.13	56.13
KRH76549	Soybean	cytosol	56.32	56.01
AT2G17190.1	Thale cress	cytosol	55.76	55.76
Bra009657.1-P	Field mustard	cytosol	56.88	55.43
KRH69678	Soybean	nucleus	56.13	55.41
CDY26796	Canola	cytosol	54.46	55.39
Bra002028.1-P	Field mustard	cytosol, plastid	56.51	55.27
CDX71349	Canola	cytosol	56.13	55.11
AT2G17200.1	Thale cress	cytosol	56.32	54.99
KRH28904	Soybean	cytosol	55.02	54.71
CDY47488	Canola	cytosol	53.16	54.48
CDX75489	Canola	cytosol	52.04	54.26
Bra037281.1-P	Field mustard	cytosol	53.9	53.51
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	50.19	52.33
Bra011602.1-P	Field mustard	cytosol	44.42	52.3
PGSC0003DMT400045106	Potato	cytosol	38.1	44.18
Solyc02g060600.1.1	Tomato	cytosol	22.86	43.77
Solyc02g060580.1.1	Tomato	cytosol	23.98	42.16
Solyc02g061720.1.1	Tomato	cytosol	26.02	41.42
Solyc02g061670.1.1	Tomato	cytosol	26.21	40.17
Solyc02g061680.1.1	Tomato	cytosol	35.87	39.96
Solyc02g060590.1.1	Tomato	cytosol	9.85	39.55
Solyc02g061610.1.1	Tomato	cytosol	35.32	38.15
Solyc02g061710.1.1	Tomato	nucleus	17.29	37.96
GSMUA_Achr1P02760_001	Banana	cytosol	8.92	37.21
Solyc02g061640.1.1	Tomato	cytosol	9.11	36.57
CDX69126	Canola	nucleus	45.35	33.84
Solyc02g060570.1.1	Tomato	cytosol	36.06	27.36

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EntrezGene:8061431	UniProt:C5WZW0
EnsemblPlants:EER92919	ProteinID:EER92919	ProteinID:EER92919.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	ScanProsite:PS00299	PFscan:PS50030
PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213	SMART:SM00727
EnsemblPlantsGene:SORBI_3001G517500	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0001A82C9B	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_002465921.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:78373181..78377727

Molecular Weight (calculated)

56605.0 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.407

Length

538 amino acids

Sequence
(BLAST)

001: MGGGDGDADA GGEPAAAQAT LHIRCTNGSK FAVRADLGTT VGAFKAIVAE SCDVPAPQQR LIYKGRILKD DQTLASYGVE TDHTIHMVRG AAPPPASTAP
101: AANQEPTTAA PASSPAAGLG GLLQSLGATG AAANSGGSGL FGSGLPELDQ MQQQLAENPN LMREIMNMPL MQNLMNSPEL IRSIIMNNPQ MRELIDRNPD
201: LAHVLNDPSI MRQTFEAVRN PELMREMMRN TDRAMSNIES SPEGFNMLRR MYETVQEPFL NATTMGSEGD RNSNPFAALL GNQGSNQARD SAANGTTTAS
301: DPTSGSPAPN TNPLPNPWGP NAGSTQGAAR SPPASNTRST TASGLGGLGS ADLGSMLGAS GGGSDATFLT QVLQNPTMMQ MMQNIMSNPQ SMNQLLNMNP
401: NVRNMMESNT QMREMIQNPE FLRQLTSPET LQQLISFQQS LMSQLGQQQA GQERTQSGSG AGNVNLNTLM NMFSGLGAGG GLGVPNAPNV PPEELYATQL
501: AQLQEMGFFD TQENIRALAA TAGNVHAAVE RLLGNMGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.