CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER92003
EER92919
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	EER92003	AT2G17200.1	23336935
AT1G79810.1	EER92919	AT2G17200.1	23336935
AT1G79810.1	EER88112	AT3G47620.1	21798944
AT1G79810.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	80.47	91.28
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	80.47	91.28
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	80.47	88.31
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	88.17	87.13
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	82.54	80.64
EES16336	Sorghum	cytosol, golgi, peroxisome	85.5	80.28
KRH44319	Soybean	plastid	71.01	72.73
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	70.41	71.47
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	69.82	70.87
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	69.53	70.57
CDX79411	Canola	plastid	69.23	69.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	75.44	69.67
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	71.3	69.65
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	71.6	69.14
CDY70404	Canola	cytosol, nucleus, peroxisome	46.75	69.0
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	71.89	68.84
Solyc12g027700.1.1	Tomato	extracellular	9.47	66.67
KRH47250	Soybean	cytosol, nucleus, peroxisome	71.01	65.93
KRH75574	Soybean	endoplasmic reticulum, extracellular	33.43	63.84
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	28.99	55.68
PGSC0003DMT400006784	Potato	cytosol	37.28	41.72

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	UniProt:A0A1B6PEA7	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	ProteinID:KXG24013.1	EnsemblPlants:KXG24014	ProteinID:KXG24014	ProteinID:KXG24014.1
PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174
InterPro:Pex_N	SMART:SM00184	EnsemblPlantsGene:SORBI_3008G172300	SUPFAM:SSF57850	UniParc:UPI0001C8071A	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:60576066..60580862

Molecular Weight (calculated)

38571.7 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.087

Length

338 amino acids

Sequence
(BLAST)

001: MPQVESAVAS EGPAPPQDAW VVEFRRLLPR WESLRDSSKV IIPISISRVN QFDAARLDVE MSAMLKEQLL KVFSLVKPGL LFQYEPELDA FLEFLIWRFS
101: IWVDKPTPGN ALMNLRYRDE WAAPITGKEV RTGLEGPGLS VSQKIFYCIS FVGGQYIWSR LQSFSAFRRW GDSEQRPLAH RAWGLVQNAE VLYRAASLFN
201: LLLFLHGGRY KTIVERILKA RLVYGSPNMN RAVSFEYMNR QLVWNEFSEM LLLLLPLLNS SSVKKFLLPF SKDKSAGSSG DEADCPICRS SPSIPFIALP
301: CQHRYCYYCL RTRCSATSSY RCPRCNEVVV AIQRQGSS

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.