Factsheet for PGSC0003DMT400042540

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	99.14	98.3
KRH44319	Soybean	plastid	76.0	80.61
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	67.14	78.86
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	66.57	78.19
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	76.29	77.17
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	67.43	76.62
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	69.71	73.27
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	69.43	72.97
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	69.43	72.97
KRH47250	Soybean	cytosol, nucleus, peroxisome	75.43	72.53
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	69.43	72.11
CDY70404	Canola	cytosol, nucleus, peroxisome	47.14	72.05
CDX79411	Canola	plastid	68.86	71.94
KRH75574	Soybean	endoplasmic reticulum, extracellular	36.29	71.75
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	70.0	71.64
KXG24014	Sorghum	cytosol, nucleus, peroxisome	69.14	71.6
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	68.57	69.36
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	70.0	66.94
EES16336	Sorghum	cytosol, golgi, peroxisome	64.86	63.06
PGSC0003DMT400006784	Potato	cytosol	39.71	46.03

Protein Annotations

EntrezGene:102603981	MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	UniProt:M1BD80	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757
EnsemblPlantsGene:PGSC0003DMG400016501	PGSC:PGSC0003DMG400016501	EnsemblPlants:PGSC0003DMT400042540	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174
InterPro:Pex_N	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002965CC2	RefSeq:XP_006356146.1	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

Peroxisome assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016501]

Coordinates

chr6:+:49230438..49237274

Molecular Weight (calculated)

39867.2 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.195

Length

350 amino acids

Sequence
(BLAST)

001: MDRQNLASSS APRGGATVHP PPQHDAWINT YRNFHPQWQS LLPPPHQSAI PISISRVNQV DAGRLDIEMS AMLKEQLVKV FSLMKPGMLF QYEPELDAFL
101: EFLIWRFSIW VDKPTPGNAL MNLRYRDERA SEIRGKVRTG LEGPGLTVAQ KIWYCVATVG GQYIWARLQS FSAFRRWGDS EQRSLARGVW LLMQRMEGIY
201: KAASFSNLLL FLYTGRFRNL IERALRARLV YGSPNMNRAV SFEYMNRQLV WNEFSELLLL LLPLLNSASV KSFLRPFSKD KSSDSSVDES LCPICQGTPS
301: IPFVAIPCQH RYCYYCLQTR CSASSSFRCP RCGEPVAAMQ RHGGLVSNIP

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.