Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- peroxisome 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002028.1-P | |
| Bra009657.1-P | |
| Bra018126.1-P | |
| Bra037281.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79810.1 | Bra002028.1-P | AT2G17200.1 | 23336935 |
| AT1G79810.1 | Bra009657.1-P | AT2G17200.1 | 23336935 |
| AT1G79810.1 | Bra037281.1-P | AT2G17200.1 | 23336935 |
| AT1G79810.1 | Bra018126.1-P | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 68.77 | 100.0 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 99.7 | 99.7 |
| CDX79411 | Canola | plastid | 98.2 | 97.61 |
| AT1G79810.1 | Thale cress | cytosol, nucleus, peroxisome | 92.49 | 92.49 |
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 69.07 | 77.18 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 68.47 | 76.51 |
| KRH44319 | Soybean | plastid | 74.17 | 74.85 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 69.07 | 74.68 |
| VIT_09s0002g04110.t01 | Wine grape | cytosol, nucleus, peroxisome | 74.77 | 71.97 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 70.87 | 69.82 |
| PGSC0003DMT400042540 | Potato | cytosol, mitochondrion, peroxisome, plastid | 72.97 | 69.43 |
| Os05t0275700-01 | Rice | cytosol, nucleus, peroxisome, plastid | 71.17 | 69.3 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 69.97 | 69.14 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 72.97 | 68.84 |
| Solyc12g027700.1.1 | Tomato | extracellular | 9.91 | 68.75 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 75.08 | 68.68 |
| HORVU7Hr1G072200.2 | Barley | cytosol, peroxisome | 71.17 | 68.5 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 36.04 | 67.8 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 71.77 | 65.3 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 65.47 | 60.56 |
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.53 | 53.98 |
| PGSC0003DMT400006784 | Potato | cytosol | 36.94 | 40.73 |
Protein Annotations
| MapMan:23.4.1.4.1 | Gene3D:3.30.40.10 | EnsemblPlantsGene:Bra003533 | EnsemblPlants:Bra003533.1 | EnsemblPlants:Bra003533.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006629 |
| GO:GO:0006635 | GO:GO:0006810 | GO:GO:0007031 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016558 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:M4CH50 | PFAM:PD124462 | PFAM:PF00097 | PFAM:PF04757 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR45174 | InterPro:Pex_N | SUPFAM:SSF57850 | UniParc:UPI00025419C4 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
AT1G79810 (E=1e-164) TED3, PEX2, ATPEX2 | TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding
Coordinates
chrA07:+:13652206..13654362
Molecular Weight (calculated)
38027.1 Da
IEP (calculated)
9.729
GRAVY (calculated)
-0.140
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPPPPDDD AWVRSHHRLL PQSQSLLSSH RSVIAVAISR VNQFDAARLD VEMSAMLKEQ LVKVFTLAKP GMLFQYEPEL DAFLEFLIWR FSIWVDKPTP
101: GNALMNLRYR DERVAAQLSG KVRTGLEGPG LTAPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL RARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAIKNILS PFAKESSSSN KEDTVACPIC QVDPATPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: GNALMNLRYR DERVAAQLSG KVRTGLEGPG LTAPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL RARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAIKNILS PFAKESSSSN KEDTVACPIC QVDPATPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Arabidopsis Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.