Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- peroxisome 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g116320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79810.1 | Solyc03g116320.2.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 45.83 | 12.5 |
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 72.92 | 11.74 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 72.92 | 11.74 |
| KRH44319 | Soybean | plastid | 79.17 | 11.52 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 72.92 | 11.36 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 83.33 | 11.33 |
| VIT_09s0002g04110.t01 | Wine grape | cytosol, nucleus, peroxisome | 81.25 | 11.27 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 39.58 | 10.73 |
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 50.0 | 10.48 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 79.17 | 10.44 |
| AT1G79810.1 | Thale cress | cytosol, nucleus, peroxisome | 70.83 | 10.21 |
| HORVU7Hr1G072200.2 | Barley | cytosol, peroxisome | 72.92 | 10.12 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 70.83 | 10.09 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 68.75 | 9.91 |
| Bra003533.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 68.75 | 9.91 |
| CDX79411 | Canola | plastid | 68.75 | 9.85 |
| Os05t0275700-01 | Rice | cytosol, nucleus, peroxisome, plastid | 68.75 | 9.65 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 72.92 | 9.56 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 66.67 | 9.47 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 66.67 | 8.89 |
Protein Annotations
| EnsemblPlants:Solyc12g027700.1.1 | EnsemblPlantsGene:Solyc12g027700.1 | PANTHER:PTHR45174 | UniParc:UPI0002769B6A | UniProt:K4DDT8 | MapMan:35.2 |
Description
No Description!
Coordinates
chr12:+:25773335..25774713
Molecular Weight (calculated)
5354.7 Da
IEP (calculated)
9.172
GRAVY (calculated)
0.535
Length
48 amino acids
Sequence
(BLAST)
(BLAST)
1: MVKEQLVKVY SLMNVPIVTG LEGPGLTVAQ KIWYCVATVS GQYLWARL
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Arabidopsis Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.