Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g03680.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79810.1 | VIT_03s0038g03680.t01 | AT2G17200.1 | 23336935 |
| AT1G79810.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44319 | Soybean | plastid | 78.61 | 82.42 |
| Solyc12g027700.1.1 | Tomato | extracellular | 11.27 | 81.25 |
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 67.92 | 78.86 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 67.92 | 78.86 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 78.61 | 77.05 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 67.92 | 76.3 |
| PGSC0003DMT400042540 | Potato | cytosol, mitochondrion, peroxisome, plastid | 77.17 | 76.29 |
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 50.0 | 75.55 |
| Bra003533.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 71.97 | 74.77 |
| AT1G79810.1 | Thale cress | cytosol, nucleus, peroxisome | 71.97 | 74.77 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 78.61 | 74.73 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 71.68 | 74.47 |
| CDX79411 | Canola | plastid | 71.68 | 74.03 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 37.57 | 73.45 |
| Os05t0275700-01 | Rice | cytosol, nucleus, peroxisome, plastid | 71.68 | 72.51 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 69.65 | 71.3 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 68.79 | 70.62 |
| HORVU7Hr1G072200.2 | Barley | cytosol, peroxisome | 69.08 | 69.08 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 72.83 | 68.85 |
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 32.95 | 64.77 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 64.45 | 61.94 |
| PGSC0003DMT400006784 | Potato | cytosol | 40.17 | 46.03 |
Protein Annotations
| EntrezGene:100246296 | wikigene:100246296 | MapMan:23.4.1.4.1 | Gene3D:3.30.40.10 | ProteinID:CBI36108 | ProteinID:CBI36108.3 |
| UniProt:D7U0G2 | EMBL:FN596494 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005829 |
| GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006629 | GO:GO:0006635 | GO:GO:0006810 | GO:GO:0007031 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009628 |
| GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016558 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100246296 | wikigene:LOC100246296 |
| PFAM:PD124462 | PFAM:PF00097 | PFAM:PF04757 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR45174 |
| InterPro:Pex_N | SUPFAM:SSF57850 | TIGR:TC64814 | UniParc:UPI00015C887D | ArrayExpress:VIT_09s0002g04110 | EnsemblPlantsGene:VIT_09s0002g04110 |
| EnsemblPlants:VIT_09s0002g04110.t01 | RefSeq:XP_002279072 | RefSeq:XP_002279072.1 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:3774816..3781202
Molecular Weight (calculated)
39729.0 Da
IEP (calculated)
9.496
GRAVY (calculated)
-0.165
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQTLDSSS TASAVAPEDA WVHTYQRLQP QWQSFSLSQQ STIPVSISRV NQVDAARLDI EISAMLKEQL VKVFSLMKPG MLFQYEPELD AFLEFLIWRF
101: SIWVDKPTPG NGLMNLRYRD ERTMELRGKV RTGLEGPGLT VAQKIWYCVA TVGGQYIWAR LQSFSAFRRW GDSEQRSVAR RAWIMIQRIE GLYKAASFSN
201: LLIFLFTGRY RNLIERALQA RLVYGSPNMN RAVSFEYMNR QLVWNEFSEM LLLLLPLLNS SSIRNFLRPF SKNKSSSSEG DETACPICQA SPTIPFLALP
301: CEHRYCYYCL RTRCAAASSF RCIRCSEPVV AMQRHFGSVS NVVPKQ
101: SIWVDKPTPG NGLMNLRYRD ERTMELRGKV RTGLEGPGLT VAQKIWYCVA TVGGQYIWAR LQSFSAFRRW GDSEQRSVAR RAWIMIQRIE GLYKAASFSN
201: LLIFLFTGRY RNLIERALQA RLVYGSPNMN RAVSFEYMNR QLVWNEFSEM LLLLLPLLNS SSIRNFLRPF SKNKSSSSEG DETACPICQA SPTIPFLALP
301: CEHRYCYYCL RTRCAAASSF RCIRCSEPVV AMQRHFGSVS NVVPKQ
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Arabidopsis Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.