CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	KRH03466	AT3G47620.1	21798944
AT1G79810.1	KRH54542	AT3G47620.1	21798944
AT1G79810.1	KRH56919	AT3G47620.1	21798944
AT1G79810.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44319	Soybean	plastid	87.91	96.97
KRH75574	Soybean	endoplasmic reticulum, extracellular	41.48	85.31
Solyc12g027700.1.1	Tomato	extracellular	10.44	79.17
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	74.73	78.61
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	63.74	77.85
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	63.19	77.18
CDY70404	Canola	cytosol, nucleus, peroxisome	48.08	76.42
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	69.23	75.68
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	64.01	75.65
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	72.53	75.43
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	68.68	75.08
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	68.68	75.08
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	72.8	75.07
CDX79411	Canola	plastid	68.41	74.33
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	65.93	71.22
KXG24014	Sorghum	cytosol, nucleus, peroxisome	65.93	71.01
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	66.48	70.76
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	66.48	69.94
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	66.76	66.39
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	29.95	61.93
EES16336	Sorghum	cytosol, golgi, peroxisome	60.44	61.11
PGSC0003DMT400006784	Potato	cytosol	36.81	44.37

Protein Annotations

EntrezGene:100800681	MapMan:23.4.1.4.1	Gene3D:3.30.40.10	UniProt:A0A0R0J296	EMBL:ACUP02004142	EnsemblPlantsGene:GLYMA_07G018400
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH47250
ProteinID:KRH47250	ProteinID:KRH47250.1	PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR45174	InterPro:Pex_N	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00023C7054
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:1460933..1465340

Molecular Weight (calculated)

41833.0 Da

IEP (calculated)

9.624

GRAVY (calculated)

-0.167

Length

364 amino acids

Sequence
(BLAST)

001: MVELVVAERQ REKEAVHGHT TKPNQIHHHH HHHAMTLPSH DAWIHTSHTL LPRWKSLSLL SHQSTLPISI SRVNQVDAAR LDVEMSAMLK EQLVKVFLLM
101: KPGMLFQYEA ELDAFLEFLI WRFSIWVDKP TPGIALMNLR YRDERAVEPR DKVRTGLEGP GLTVAQKLWY CVATVGGQYI WARLQSFSAF RRWGDTEQRP
201: LARRLWILIQ RIEGIYRAAS FGNLLIFLCT GRYRNLIERA LRARLVYGSP NMNRAVSFEY MNRQLVWNEF SEMLLLLLPL LNSSSVKNLL RPFSKDKSSG
301: SAEDGTACPI CQATPTIPYV ALPCQHRYCY YCLRTRCAAA PSFRCSRCSE PVVAMQRLGG VPTE

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.