Factsheet for PGSC0003DMT400006784

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75574	Soybean	endoplasmic reticulum, extracellular	24.5	41.81
KRH44319	Soybean	plastid	45.03	41.21
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	46.03	40.17
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	46.03	39.71
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	39.07	39.6
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	39.07	39.6
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	39.07	38.31
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	42.38	37.98
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	42.38	37.43
KXG24014	Sorghum	cytosol, nucleus, peroxisome	41.72	37.28
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	41.06	37.24
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	40.73	36.94
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	40.73	36.94
KRH47250	Soybean	cytosol, nucleus, peroxisome	44.37	36.81
CDX79411	Canola	plastid	40.73	36.72
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	44.04	36.34
CDY70404	Canola	cytosol, nucleus, peroxisome	26.82	35.37
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	40.4	35.26
EES16336	Sorghum	cytosol, golgi, peroxisome	41.06	34.44
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	19.21	32.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400006784	EnsemblPlantsGene:PGSC0003DMG400002631	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Pex_N
PANTHER:PTHR45174	PFAM:PF04757	PGSC:PGSC0003DMG400002631	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295A948
UniProt:M0ZRY9	MapMan:23.4.1.4.1	:	:	:	:

Description

Peroxisome assembly factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002631]

Coordinates

chr3:+:59928015..59934670

Molecular Weight (calculated)

34028.6 Da

IEP (calculated)

8.834

GRAVY (calculated)

0.226

Length

302 amino acids

Sequence
(BLAST)

001: MDGLTLASSA SSSTGDLPPQ EDARLTTYYK LLPPWKSLAS SHQVYITIFS AIPVSISRVN QVDAARLDIE MSAMLKEQLV KVFSLMKECY FNMSQNLMLS
101: WSSLSGVFLS GLISLHWYRN LIERALRARL VYGSPNMNRA VSFEYMNRQL VWNEFSELLL LLLPLLNSSS IKNFLLPFSK DKSSDSSVDD TSCPICQGKP
201: TIPFLTIPCQ HRGDILLVRS SCHPFGLTSF MCRFIALVLV TVVHVSFMYL HHYTAAVTTV FKHGAPLLRL FAAPDVVNRL LLCNDMVVRS TTLVRYNNSL
301: ER

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.