Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70404 | Canola | cytosol, nucleus, peroxisome | 65.47 | 95.2 |
| Bra003533.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 92.49 | 92.49 |
| CDX67927 | Canola | cytosol, nucleus, peroxisome, plastid | 92.19 | 92.19 |
| CDX79411 | Canola | plastid | 92.19 | 91.64 |
| TraesCS7B01G204300.2 | Wheat | cytosol, peroxisome, plastid | 70.87 | 79.19 |
| TraesCS7A01G303900.1 | Wheat | cytosol, nucleus, peroxisome | 70.27 | 78.52 |
| TraesCS7D01G299400.1 | Wheat | cytosol, golgi, mitochondrion, nucleus | 71.17 | 76.95 |
| KRH44319 | Soybean | plastid | 75.08 | 75.76 |
| VIT_09s0002g04110.t01 | Wine grape | cytosol, nucleus, peroxisome | 74.77 | 71.97 |
| Solyc12g027700.1.1 | Tomato | extracellular | 10.21 | 70.83 |
| Os05t0275700-01 | Rice | cytosol, nucleus, peroxisome, plastid | 72.67 | 70.76 |
| KXG24014 | Sorghum | cytosol, nucleus, peroxisome | 71.47 | 70.41 |
| KRH75574 | Soybean | endoplasmic reticulum, extracellular | 37.24 | 70.06 |
| Zm00001d031028_P004 | Maize | cytosol, nucleus, peroxisome | 70.87 | 70.03 |
| PGSC0003DMT400042540 | Potato | cytosol, mitochondrion, peroxisome, plastid | 73.27 | 69.71 |
| HORVU7Hr1G072200.2 | Barley | cytosol, peroxisome | 72.37 | 69.65 |
| Solyc06g066570.2.1 | Tomato | cytosol, mitochondrion, peroxisome, plastid | 73.57 | 69.41 |
| KRH47250 | Soybean | cytosol, nucleus, peroxisome | 75.68 | 69.23 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome, plastid | 72.07 | 65.57 |
| EES16336 | Sorghum | cytosol, golgi, peroxisome | 65.77 | 60.83 |
| Solyc03g120520.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.83 | 54.55 |
| PGSC0003DMT400006784 | Potato | cytosol | 37.24 | 41.06 |
Protein Annotations
| MapMan:23.4.1.4.1 | Gene3D:3.30.40.10 | EntrezGene:844320 | ProteinID:AAF68113.1 | ProteinID:AAG52254.1 | ProteinID:AEE36301.1 |
| ProteinID:AEE36302.1 | ArrayExpress:AT1G79810 | EnsemblPlantsGene:AT1G79810 | RefSeq:AT1G79810 | TAIR:AT1G79810 | RefSeq:AT1G79810-TAIR-G |
| EnsemblPlants:AT1G79810.1 | TAIR:AT1G79810.1 | EMBL:AY064063 | EMBL:AY084823 | EMBL:AY096373 | Unigene:At.14743 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005778 | GO:GO:0005829 |
| GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006629 | GO:GO:0006635 | GO:GO:0006810 | GO:GO:0007031 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009628 |
| GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016558 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_565222.1 |
| RefSeq:NP_974183.1 | PFAM:PD124462 | PFAM:PF00097 | PFAM:PF04757 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0009072 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR45174 | InterPro:Pex_N | UniProt:Q9CA86 | SUPFAM:SSF57850 | Symbol:TED3 |
| UniParc:UPI00000A2C28 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
Coordinates
chr1:+:30019744..30022486
Molecular Weight (calculated)
38176.5 Da
IEP (calculated)
9.875
GRAVY (calculated)
-0.118
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.