CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71349
CDX88001
CDY07870
CDY24170
CDY26796
CDY31374
CDY36943
CDY47488

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79810.1	CDX71349	AT2G17200.1	23336935
AT1G79810.1	CDX88001	AT2G17200.1	23336935
AT1G79810.1	CDY07870	AT2G17200.1	23336935
AT1G79810.1	CDY26796	AT2G17200.1	23336935
AT1G79810.1	CDY31374	AT2G17200.1	23336935
AT1G79810.1	CDY47488	AT2G17200.1	23336935
AT1G79810.1	CDY24170	AT3G47620.1	21798944
AT1G79810.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70404	Canola	cytosol, nucleus, peroxisome	68.06	99.56
CDX67927	Canola	cytosol, nucleus, peroxisome, plastid	97.91	98.5
Bra003533.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	97.61	98.2
AT1G79810.1	Thale cress	cytosol, nucleus, peroxisome	91.64	92.19
TraesCS7B01G204300.2	Wheat	cytosol, peroxisome, plastid	68.36	76.85
TraesCS7A01G303900.1	Wheat	cytosol, nucleus, peroxisome	67.76	76.17
KRH44319	Soybean	plastid	73.43	74.55
TraesCS7D01G299400.1	Wheat	cytosol, golgi, mitochondrion, nucleus	68.36	74.35
VIT_09s0002g04110.t01	Wine grape	cytosol, nucleus, peroxisome	74.03	71.68
KXG24014	Sorghum	cytosol, nucleus, peroxisome	69.85	69.23
Os05t0275700-01	Rice	cytosol, nucleus, peroxisome, plastid	70.45	69.01
PGSC0003DMT400042540	Potato	cytosol, mitochondrion, peroxisome, plastid	71.94	68.86
Zm00001d031028_P004	Maize	cytosol, nucleus, peroxisome	69.25	68.84
Solyc12g027700.1.1	Tomato	extracellular	9.85	68.75
KRH47250	Soybean	cytosol, nucleus, peroxisome	74.33	68.41
Solyc06g066570.2.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	71.94	68.27
HORVU7Hr1G072200.2	Barley	cytosol, peroxisome	70.15	67.92
KRH75574	Soybean	endoplasmic reticulum, extracellular	35.82	67.8
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	71.34	65.3
EES16336	Sorghum	cytosol, golgi, peroxisome	64.78	60.28
Solyc03g120520.1.1	Tomato	cytosol, nucleus, peroxisome	28.06	53.41
PGSC0003DMT400006784	Potato	cytosol	36.72	40.73

Protein Annotations

MapMan:23.4.1.4.1	Gene3D:3.30.40.10	GO:A0A078CQE0	EnsemblPlants:CDX79411	ProteinID:CDX79411	ProteinID:CDX79411.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00132130001	InterPro:IPR001841	InterPro:IPR013083
PFAM:PD124462	PFAM:PF00097	PFAM:PF04757	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR45174
InterPro:Pex_N	SUPFAM:SSF57850	UniParc:UPI0004EDBDBE	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaC06g18920D

Coordinates

chrLK031817:-:2014238..2016495

Molecular Weight (calculated)

38254.4 Da

IEP (calculated)

9.834

GRAVY (calculated)

-0.153

Length

335 amino acids

Sequence
(BLAST)

001: MTSPPPPPPD DDAWVRSHQR LLPQSRSLLS SHRSVIAVAI SRVNQFDAAR LDVEMSAMLK EQLVKVFTLA KPGMLFQYEP ELDAFLEFLI WRFSIWVDKP
101: TPGNALMNLR YRDERVAAQL SGKVRTGLEG PGLTAPQKIW YCVASVGGQY LFSRLQSFSA FRRWGDSEQR PLARRLWTLV QRIEGIYKAA SFLNLLSFLY
201: TGRYRNLIEK ALRARLVYRS PHMNRSVSFE YMNRQLVWNE FSEMLLLLLP LLNSSAIKNI LSPFAKESSS SNKEDTVACP ICQVDPATPF IALPCQHRYC
301: YYCIRTRCAS AASFRCLRCN EPVVAIQREG VTSGK

Best Arabidopsis Sequence Match ( AT1G79810.1 )
(BLAST)

001: MTPSTPADDA WIRSYQRLLP ESQSLLASRR SVIPVAISRV NQFDAARLDV EMSAMLKEQL VKVFTLMKPG MLFQYEPELD AFLEFLIWRF SIWVDKPTPG
101: NALMNLRYRD ERGVVAQHLG KVRTGLEGPG LTSPQKIWYC VASVGGQYLF SRLQSFSAFR RWGDSEQRPL ARRLWTLVQR IEGIYKAASF LNLLSFLYTG
201: RYRNLIEKAL KARLVYRSPH MNRSVSFEYM NRQLVWNEFS EMLLLLLPLL NSSAVKNILS PFAKDKSSST KEDTVTCPIC QVDPAIPFIA LPCQHRYCYY
301: CIRTRCASAA SFRCLRCNEP VVAIQREGVS SGK

Arabidopsis Description

PEX2Peroxisome biogenesis protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA86]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.