CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67927
CDX72742
CDX79411
CDX90286
CDX97722
CDY12093
CDY22415
CDY30135
CDY70404

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	CDX67927	AT1G79810.1	23336935
AT2G17190.1	CDX79411	AT1G79810.1	23336935
AT2G17190.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX67927	AT1G79810.1	23336935
AT2G17200.1	CDX79411	AT1G79810.1	23336935
AT2G17200.1	CDY70404	AT1G79810.1	23336935
AT2G17200.1	CDX97722	AT3G16120.1	21798944
AT2G17200.1	CDY30135	AT3G16120.1	21798944
AT2G17200.1	CDX72742	AT4G38630.1	20059542
AT2G17200.1	CDX90286	AT4G38630.1	20059542
AT2G17200.1	CDY12093	AT4G38630.1	20059542
AT2G17200.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31374	Canola	cytosol, plastid	93.07	95.15
CDY07870	Canola	cytosol	84.67	86.25
CDX88001	Canola	cytosol	84.67	85.61
CDY47488	Canola	cytosol	79.01	82.48
CDY26796	Canola	cytosol	78.47	81.29
AT2G17190.1	Thale cress	cytosol	79.56	81.04
AT2G17200.1	Thale cress	cytosol	81.2	80.76
CDX75489	Canola	cytosol	66.97	71.12
VIT_03s0038g03680.t01	Wine grape	cytosol	63.5	60.0
GSMUA_Achr5P11110_001	Banana	cytosol	55.84	57.41
TraesCS4B01G325900.2	Wheat	cytosol	55.11	56.77
HORVU4Hr1G082050.15	Barley	cytosol	54.74	56.18
EER92919	Sorghum	cytosol	55.11	56.13
Zm00001d027514_P002	Maize	cytosol	54.74	55.97
Zm00001d048343_P001	Maize	cytosol	54.01	55.53
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	45.62	54.95
Os03t0131300-01	Rice	plasma membrane	52.92	54.31
TraesCS1D01G206500.1	Wheat	cytosol	55.47	53.9
GSMUA_Achr3P00530_001	Banana	cytosol	54.2	53.71
TraesCS1B01G217000.1	Wheat	cytosol	55.66	53.7
GSMUA_Achr1P14990_001	Banana	cytosol	54.2	53.61
TraesCS1A01G203000.1	Wheat	cytosol	55.47	53.52
TraesCS4D01G322800.1	Wheat	cytosol	55.11	53.17
TraesCS5A01G498100.1	Wheat	cytosol	55.11	53.17
Os10t0542200-01	Rice	plasma membrane, plastid	55.29	52.7
EER92003	Sorghum	cytosol	55.29	52.24
Zm00001d047373_P001	Maize	cytosol	53.65	51.04
GSMUA_Achr7P04060_001	Banana	cytosol	50.73	51.01
HORVU1Hr1G052260.2	Barley	cytosol	52.55	50.44
Zm00001d029782_P004	Maize	cytosol	54.38	50.25
CDX69126	Canola	nucleus	57.12	43.41
GSMUA_Achr1P02760_001	Banana	cytosol	8.58	36.43

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EnsemblPlants:CDX71349	ProteinID:CDX71349	ProteinID:CDX71349.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00145043001	InterPro:IPR000626	InterPro:IPR015940
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE8B66	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaC07g06280D

Coordinates

chrLK031792:-:3419818..3423124

Molecular Weight (calculated)

57856.1 Da

IEP (calculated)

4.521

GRAVY (calculated)

-0.502

Length

548 amino acids

Sequence
(BLAST)

001: MGGEGDSSQP LTAAVDGGEG GGDATVSVNV RCSNGSKFSV RTSLDSTVGA FKELVAQNSE VPANQQRLIY KGRILKDDQS LVSYGLEADH TVHMVRGSAP
101: SSSPPPSAPV NQPTPPSVTR GVGSNAGEAL FPGLGFNPLG GGGGNAMSGL FGAGLPDLEQ AQQQLAQNPN MIRDMMNTPA IQNLMNNPEF MRSMIMSNPQ
201: MRDLVDRNPE LGHVLNDPSI LRQTMEAARN PELMREMMRN TDRAMSNIES MPEGFNHLRR MYENVQEPLM NATTMSGNAG NNAASNPFAA LLGNQGVTTQ
301: GSDASNNSTT PSAETGTGNG IPNANPLPNP WGATAGQTNA PGRTNSSGDT RSPGLGLGGL GGLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSLLSNPQY
401: MNQLMNLNPQ LRTMLDSNPQ LREMMQNPDF LRQFSSPEMM QQMMTLQQSL FPQNRNTSSQ EPGQTGAAAA GSNNAGLDLL MNMFGSLGAG GLSGTNQSNV
501: PPEERFATQL QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.