Factsheet for Zm00001d048343_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016016_P001
Zm00001d024336_P001
Zm00001d028396_P001
Zm00001d031028_P004
Zm00001d040834_P001
Zm00001d043386_P001
Zm00001d047941_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d031028_P004	AT1G79810.1	23336935
AT2G17200.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT2G17200.1	Zm00001d024336_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d028396_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d040834_P001	AT4G38630.1	20059542
AT2G17200.1	Zm00001d047941_P001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92919	Sorghum	cytosol	93.06	92.19
Zm00001d027514_P002	Maize	cytosol	91.74	91.23
Os03t0131300-01	Rice	plasma membrane	78.24	78.09
HORVU4Hr1G082050.15	Barley	cytosol	76.55	76.4
TraesCS4B01G325900.2	Wheat	cytosol	75.23	75.38
TraesCS5A01G498100.1	Wheat	cytosol	73.55	69.01
TraesCS4D01G322800.1	Wheat	cytosol	72.61	68.13
KRH07807	Soybean	cytosol, mitochondrion, nucleus	8.26	65.67
Zm00001d047373_P001	Maize	cytosol	69.04	63.89
Zm00001d029782_P004	Maize	cytosol	69.23	62.23
GSMUA_Achr5P11110_001	Banana	cytosol	61.16	61.16
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	50.47	59.12
PGSC0003DMT400048093	Potato	extracellular	8.63	56.79
PGSC0003DMT400003987	Potato	cytosol	58.72	56.7
Solyc03g032160.2.1	Tomato	plastid	58.54	56.01
Solyc02g082800.2.1	Tomato	plastid	57.6	55.52
KRH07920	Soybean	cytosol	56.29	55.45
AT2G17190.1	Thale cress	cytosol	55.72	55.2
KRH76549	Soybean	cytosol	55.91	55.08
VIT_03s0038g03680.t01	Wine grape	cytosol	59.66	54.83
CDX88001	Canola	cytosol	55.72	54.8
KRH69678	Soybean	nucleus	55.91	54.68
CDY31374	Canola	cytosol, plastid	54.97	54.66
CDY07870	Canola	cytosol	55.16	54.65
CDY26796	Canola	cytosol	54.22	54.63
CDX71349	Canola	cytosol	55.53	54.01
KRH28904	Soybean	cytosol	54.78	53.97
Bra002028.1-P	Field mustard	cytosol, plastid	55.53	53.82
AT2G17200.1	Thale cress	cytosol	55.53	53.72
Bra009657.1-P	Field mustard	cytosol	55.53	53.62
CDY47488	Canola	cytosol	52.72	53.52
CDX75489	Canola	cytosol	51.22	52.91
Bra037281.1-P	Field mustard	cytosol	53.47	52.58
Bra011602.1-P	Field mustard	cytosol	43.71	50.98
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	48.59	50.19
PGSC0003DMT400045106	Potato	cytosol	37.71	43.32
Solyc02g060600.1.1	Tomato	cytosol	22.33	42.35
Solyc02g060580.1.1	Tomato	cytosol	23.83	41.5
Solyc02g061720.1.1	Tomato	cytosol	25.14	39.65
Solyc02g061670.1.1	Tomato	cytosol	25.89	39.32
GSMUA_Achr1P02760_001	Banana	cytosol	9.38	38.76
Solyc02g061680.1.1	Tomato	cytosol	34.71	38.3
Solyc02g061710.1.1	Tomato	nucleus	17.26	37.55
Solyc02g060590.1.1	Tomato	cytosol	9.38	37.31
Solyc02g061610.1.1	Tomato	cytosol	34.33	36.75
Solyc02g061640.1.1	Tomato	cytosol	8.82	35.07
CDX69126	Canola	nucleus	44.28	32.73
Solyc02g060570.1.1	Tomato	cytosol	35.65	26.8

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	EntrezGene:100283983	MapMan:19.3.4.6	Gene3D:3.10.20.90	ProteinID:AQL09457.1
ProteinID:AQL09458.1	UniProt:B6TNT9	EMBL:BT066802	EMBL:EU966654	EMBL:EU969565	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000182D58D	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d048343	EnsemblPlants:Zm00001d048343_P001
EnsemblPlants:Zm00001d048343_T001	SEG:seg	:	:	:	:

Description

Ubiquitin domain-containing protein DSK2b

Coordinates

chr9:-:154791159..154796710

Molecular Weight (calculated)

56375.6 Da

IEP (calculated)

4.703

GRAVY (calculated)

-0.438

Length

533 amino acids

Sequence
(BLAST)

001: MGGGDADAGG EPADAQATLH IRCTNGSKFT VRTDLGATVG AFKAIVAHSC DVPAPQQRLI YKGRILKDEQ TLASYGVETD HTIHMVRGAV LSPTSTAPAA
101: NQEPTTAAPA SSPATGLGGL LQSLGTTGAA ANSEGLFGSA PPGLDQMQQQ LAENPNLMRE MMNMPLMQNL MNNPELIRSI IMNNPQMREL IDRNPDLAHV
201: LNDPSIMRQT FEAVRNPELM REMMRNTDRA MSNIESSPEG FNMLRRMYET VQEPFLNATT MGSEGDRNSN PFSALLGNQG SNQARDSAAN GTTRASDPTS
301: GSPAPNTNPL PNPWGSNAGS AQGAARSSPA SNVRSTTASG LGGLGSADLG STHGASGGGS DATLLTQVLQ NPTMMQMMQN IMSNPQSMNQ LLNMNPNVRN
401: MMESNTQMRE MIENPEFLRQ LTSPETLQQL ISFQQSLMSQ LGQQQAGQER TQSGSGAGNV NLNTLMNMFS GLGAGGGLGV PNAPNAPPEE LYATQLAQLQ
501: EMGFFDTQEN IRALAATAGN VHAAVERLLG NMG

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.