Factsheet for PGSC0003DMT400003987

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082800.2.1	Tomato	plastid	96.74	96.56
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.97	65.67
KRH76549	Soybean	cytosol	64.13	65.43
KRH07920	Soybean	cytosol	63.22	64.51
KRH28904	Soybean	cytosol	63.22	64.51
KRH69678	Soybean	nucleus	62.5	63.3
GSMUA_Achr5P11110_001	Banana	cytosol	59.96	62.1
PGSC0003DMT400045106	Potato	cytosol	52.17	62.07
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	57.97	62.02
PGSC0003DMT400048093	Potato	extracellular	8.88	60.49
Os03t0131300-01	Rice	plasma membrane	57.97	59.93
GSMUA_Achr3P00530_001	Banana	cytosol	59.96	59.86
Zm00001d027514_P002	Maize	cytosol	57.79	59.51
GSMUA_Achr1P14990_001	Banana	cytosol	59.6	59.39
EER92919	Sorghum	cytosol	57.79	59.29
TraesCS4B01G325900.2	Wheat	cytosol	56.88	59.02
Zm00001d048343_P001	Maize	cytosol	56.7	58.72
HORVU4Hr1G082050.15	Barley	cytosol	55.98	57.87
TraesCS1D01G206500.1	Wheat	cytosol	58.88	57.62
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.46	57.58
GSMUA_Achr7P04060_001	Banana	cytosol	56.7	57.43
TraesCS1B01G217000.1	Wheat	cytosol	58.88	57.22
EER92003	Sorghum	cytosol	59.6	56.72
TraesCS1A01G203000.1	Wheat	cytosol	58.15	56.51
Zm00001d047373_P001	Maize	cytosol	58.88	56.42
Os10t0542200-01	Rice	plasma membrane, plastid	58.7	56.35
TraesCS4D01G322800.1	Wheat	cytosol	56.52	54.93
TraesCS5A01G498100.1	Wheat	cytosol	56.52	54.93
HORVU1Hr1G052260.2	Barley	cytosol	56.16	54.29
Zm00001d029782_P004	Maize	cytosol	57.61	53.63
GSMUA_Achr1P02760_001	Banana	cytosol	7.79	33.33

Protein Annotations

Gene3D:1.10.260.100	Gene3D:1.10.8.10	EntrezGene:102592394	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	UniProt:M0ZMN8	PFAM:PF00240
PFAM:PF00627	EnsemblPlantsGene:PGSC0003DMG400001571	PGSC:PGSC0003DMG400001571	EnsemblPlants:PGSC0003DMT400003987	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10677	PANTHER:PTHR10677:SF39	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00029690C0	InterPro:Ubiquilin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006340830.1	SEG:seg	:	:

Description

Plant ubiquilin [Source:PGSC_GENE;Acc:PGSC0003DMG400001571]

Coordinates

chr2:-:38619468..38627657

Molecular Weight (calculated)

58538.4 Da

IEP (calculated)

4.600

GRAVY (calculated)

-0.469

Length

552 amino acids

Sequence
(BLAST)

001: MGGGDTSAAA AKEDNENNAT GDQKVTINVR CSNGSKFTVQ VALDSSVGSF KSTLAQHSDI PAEQQRLIYK GRILKDEQTL TSYGLEADHT VHLVRGFAPA
101: AAVNTASTVN TGNPNANQNA PSDAAPNVGG PFSGSGLGLG LGSGGGGGGL LGAGLPDFEQ VQQQLTQNPN MMRDMLNMPL VQNLMNNPEI IRNMIMNNPQ
201: MREIMDRNPE LAHVLNDPAT LRQTMEAARN PELMREMMRN TDRAMSNIES SPEGFNMLRR MYENVQEPLL NATTMGGDAR SDVGSNPFAA LLGAQGAGQG
301: RNQSTNPPTT GSEATANTPA PNTNPLPNPW ASAGTGAGQT NTTARSNTAA ETRAPLPAGL GGLALPDLEG MLGGMPDATS LNQMMQNPAV SQMMQSLLSN
401: PQYMNQMLGM NPQLRNMLDS NSHLREMMQN PEFIRQMTSP ETMQQLMTFQ QGLLSQLGRQ PTNQPGQNVG GAALDNNMGM EMLMNMFGGL GSGGLGGVPN
501: RSNVPPEELY ATQLAQLQDM GFFDTQENIR ALVATAGNVH AAVERLLGNL GQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.