CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69678	Soybean	nucleus	96.3	95.6
KRH76549	Soybean	cytosol	82.99	82.99
KRH28904	Soybean	cytosol	80.59	80.59
KRH07807	Soybean	cytosol, mitochondrion, nucleus	9.61	77.61
Solyc02g082800.2.1	Tomato	plastid	65.06	63.65
PGSC0003DMT400003987	Potato	cytosol	64.51	63.22
Solyc03g032160.2.1	Tomato	plastid	62.85	61.04
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	57.86	60.66
GSMUA_Achr5P11110_001	Banana	cytosol	58.6	59.47
PGSC0003DMT400048093	Potato	extracellular	8.69	58.02
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.87	56.92
GSMUA_Achr1P14990_001	Banana	cytosol	58.23	56.86
Os03t0131300-01	Rice	plasma membrane	56.01	56.74
EER92919	Sorghum	cytosol	56.38	56.69
TraesCS4B01G325900.2	Wheat	cytosol	55.64	56.58
Zm00001d048343_P001	Maize	cytosol	55.45	56.29
GSMUA_Achr3P00530_001	Banana	cytosol	57.3	56.06
Zm00001d027514_P002	Maize	cytosol	55.27	55.78
HORVU4Hr1G082050.15	Barley	cytosol	54.9	55.62
TraesCS1B01G217000.1	Wheat	cytosol	58.04	55.28
TraesCS1D01G206500.1	Wheat	cytosol	57.49	55.14
TraesCS1A01G203000.1	Wheat	cytosol	57.3	54.58
Os10t0542200-01	Rice	plasma membrane, plastid	56.56	53.22
TraesCS4D01G322800.1	Wheat	cytosol	55.82	53.17
TraesCS5A01G498100.1	Wheat	cytosol	55.45	52.82
EER92003	Sorghum	cytosol	56.56	52.76
Zm00001d047373_P001	Maize	cytosol	56.01	52.6
GSMUA_Achr7P04060_001	Banana	cytosol	52.87	52.48
HORVU1Hr1G052260.2	Barley	cytosol	53.6	50.79
PGSC0003DMT400045106	Potato	cytosol	43.44	50.65
Zm00001d029782_P004	Maize	cytosol	55.27	50.42
Solyc02g060580.1.1	Tomato	cytosol	27.17	48.04
Solyc02g060600.1.1	Tomato	cytosol	23.84	45.91
Solyc02g060590.1.1	Tomato	cytosol	11.28	45.52
Solyc02g061670.1.1	Tomato	cytosol	29.02	44.73
Solyc02g061640.1.1	Tomato	cytosol	10.91	44.03
Solyc02g061720.1.1	Tomato	cytosol	27.17	43.49
Solyc02g061680.1.1	Tomato	cytosol	38.26	42.86
Solyc02g061610.1.1	Tomato	cytosol	37.34	40.56
Solyc02g061710.1.1	Tomato	nucleus	17.38	38.37
GSMUA_Achr1P02760_001	Banana	cytosol	8.32	34.88
Solyc02g060570.1.1	Tomato	cytosol	38.63	29.48

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100776447	MapMan:19.3.4.6	Gene3D:3.10.20.90	EMBL:ACUP02010123	EnsemblPlantsGene:GLYMA_16G118400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MMX7	InterPro:IPR000626	InterPro:IPR015940
EnsemblPlants:KRH07920	ProteinID:KRH07920	ProteinID:KRH07920.1	ProteinID:KRH07921.1	ProteinID:KRH07922.1	ProteinID:KRH07923.1
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000233B62D	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:26357389..26371741

Molecular Weight (calculated)

57718.9 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.506

Length

541 amino acids

Sequence
(BLAST)

001: MGGDSAIEES EGVNVNINVR CSNGFKFSVQ IAVDSTVSSF KDVVARNCDI PAEQQRLIYK GRILKDDQTL RSYGLEADHT VHLVRGSAPA NPTGGTNTSS
101: TNTNTTTNNA RGAGANEGGG LGGLGFGASL FPGLGVNGTG GNGLFGEGFP DLEQMQQPFI SNPNLVREIM NSPTMQNLMN NPEIVRNLIM NNPQMQELMD
201: RNPELAHILN DPSTLRQTLE ATRNPEIMRE MMRNTDRAMS NIESSPEGFN MLRRMYENIQ EPFLNATTMA GNTGNNNAAV SGTHGGHARD RSTNPSTTSS
301: EATAGSPLPN TNPLPNPWSS TGTGGAQNNP RRSLTTGVDA RQQGPTGLGG LGLPDLESMM GGSAMPDAAL LTQLMQNPAI SQMMQSMLSN PQTLNQILGA
401: NTEQRGMPDL NSLREVMQNP EFLRLFSSPE TLQQLLSFQQ ALMSQLGQQQ STRESGQTGG GTGPMNNLGL EMLSSMFGGL GAGSLAVPNR SNEPPEQLYA
501: SQLSQLQEMG FFDTQENIRA LIATSGNVHA AVERLLGNSG Q

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.