Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0269200-01 | |
| Os03t0243300-01 | |
| Os05t0275700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17190.1 | Os05t0275700-01 | AT1G79810.1 | 23336935 |
| AT2G17200.1 | Os05t0275700-01 | AT1G79810.1 | 23336935 |
| AT2G17200.1 | Os02t0269200-01 | AT3G16120.1 | 21798944 |
| AT2G17200.1 | Os03t0243300-01 | AT4G38630.1 | 20059542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92003 | Sorghum | cytosol | 81.57 | 80.86 |
| TraesCS1D01G206500.1 | Wheat | cytosol | 78.61 | 80.14 |
| TraesCS1B01G217000.1 | Wheat | cytosol | 79.13 | 80.11 |
| TraesCS1A01G203000.1 | Wheat | cytosol | 78.26 | 79.23 |
| Zm00001d047373_P001 | Maize | cytosol | 79.3 | 79.17 |
| HORVU1Hr1G052260.2 | Barley | cytosol | 76.35 | 76.88 |
| Zm00001d029782_P004 | Maize | cytosol | 77.04 | 74.7 |
| Os03t0131300-01 | Rice | plasma membrane | 67.65 | 72.85 |
| GSMUA_Achr5P11110_001 | Banana | cytosol | 59.48 | 64.17 |
| GSMUA_Achr1P02770_001 | Banana | extracellular, plasma membrane, vacuole | 48.35 | 61.1 |
| Solyc02g082800.2.1 | Tomato | plastid | 56.52 | 58.77 |
| PGSC0003DMT400003987 | Potato | cytosol | 56.35 | 58.7 |
| KRH07807 | Soybean | cytosol, mitochondrion, nucleus | 6.78 | 58.21 |
| KRH76549 | Soybean | cytosol | 54.26 | 57.67 |
| AT2G17190.1 | Thale cress | cytosol | 53.74 | 57.43 |
| KRH28904 | Soybean | cytosol | 53.74 | 57.12 |
| CDX88001 | Canola | cytosol | 53.74 | 57.01 |
| Solyc03g032160.2.1 | Tomato | plastid | 55.13 | 56.91 |
| Bra009657.1-P | Field mustard | cytosol | 54.61 | 56.88 |
| Bra002028.1-P | Field mustard | cytosol, plastid | 54.26 | 56.73 |
| CDY31374 | Canola | cytosol, plastid | 52.87 | 56.72 |
| AT2G17200.1 | Thale cress | cytosol | 54.26 | 56.62 |
| KRH07920 | Soybean | cytosol | 53.22 | 56.56 |
| CDY26796 | Canola | cytosol | 52.0 | 56.52 |
| VIT_03s0038g03680.t01 | Wine grape | cytosol | 56.7 | 56.21 |
| CDY07870 | Canola | cytosol | 52.52 | 56.13 |
| KRH69678 | Soybean | nucleus | 53.04 | 55.96 |
| Bra037281.1-P | Field mustard | cytosol | 52.7 | 55.9 |
| PGSC0003DMT400048093 | Potato | extracellular | 7.83 | 55.56 |
| CDY47488 | Canola | cytosol | 50.61 | 55.43 |
| CDX71349 | Canola | cytosol | 52.7 | 55.29 |
| CDX75489 | Canola | cytosol | 49.22 | 54.84 |
| Bra011602.1-P | Field mustard | cytosol | 42.26 | 53.17 |
| VIT_04s0210g00220.t01 | Wine grape | cytosol, nucleus | 46.09 | 51.36 |
| PGSC0003DMT400045106 | Potato | cytosol | 36.87 | 45.69 |
| Solyc02g060600.1.1 | Tomato | cytosol | 21.57 | 44.13 |
| Solyc02g060580.1.1 | Tomato | cytosol | 22.96 | 43.14 |
| Solyc02g061670.1.1 | Tomato | cytosol | 25.39 | 41.6 |
| Solyc02g061720.1.1 | Tomato | cytosol | 24.0 | 40.83 |
| Solyc02g061710.1.1 | Tomato | nucleus | 17.22 | 40.41 |
| Solyc02g061680.1.1 | Tomato | cytosol | 32.7 | 38.92 |
| GSMUA_Achr1P02760_001 | Banana | cytosol | 8.52 | 37.98 |
| Solyc02g061610.1.1 | Tomato | cytosol | 32.7 | 37.75 |
| Solyc02g060590.1.1 | Tomato | cytosol | 8.52 | 36.57 |
| Solyc02g061640.1.1 | Tomato | cytosol | 8.0 | 34.33 |
| CDX69126 | Canola | nucleus | 42.61 | 33.98 |
| Solyc02g060570.1.1 | Tomato | cytosol | 34.26 | 27.79 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.3.4.6 | Gene3D:3.10.20.90 | EntrezGene:4349264 | ProteinID:AAG13589.1 | ProteinID:AAP54859.1 |
| ProteinID:BAF27107.1 | ProteinID:BAT11873.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 |
| InterPro:IPR015940 | EnsemblPlantsGene:Os10g0542200 | EnsemblPlants:Os10t0542200-01 | PFAM:PF00240 | PFAM:PF00627 | PFscan:PS50030 |
| PFscan:PS50053 | PANTHER:PTHR10677 | PANTHER:PTHR10677:SF28 | UniProt:Q7XCL2 | SMART:SM00165 | SMART:SM00213 |
| SMART:SM00727 | SUPFAM:SSF46934 | SUPFAM:SSF54236 | InterPro:STI1_HS-bd | InterPro:UBA | InterPro:UBA-like_sf |
| UniParc:UPI000009CB06 | InterPro:Ubiquilin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | RefSeq:XP_015614223.1 | SEG:seg |
Description
Ubiquilin domain containing protein. (Os10t0542200-01);Hypothetical conserved gene. (Os10t0542200-03)
Coordinates
chr10:-:21169734..21174539
Molecular Weight (calculated)
59318.0 Da
IEP (calculated)
4.448
GRAVY (calculated)
-0.357
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGEAGG GDGGESSPAA AAAAAVAGAA ALHIRCANGS KFTVRADLDA TVGAFKEVVA GSCDVPAAQQ RLIYKGRILK DEQTLESYGV ETDHTIHMVR
101: GAGPPAGSAA PAAASPQASA APSSGPTDGL GSLFPGLGGT GTAGTRPSGL FGSGFPELDQ MQQQLSQNPN LMREIMNMPM MQNLMNNPDL IRNMIMNNPQ
201: MRDIIDRNPD LAHVLNDPSV LRQTLEAARN PEIMREMMRN TDRAMSNIES SPEGFNMLRR MYETVQEPFL NATTMGGEGN TAPNPFSALL GNQGSNQPRD
301: PATNAPNTGS ESTTGTPAPN TNPLPNPWSS NAGGAQGATR AGSTGNARTG ATGGLGGLGS ADLSSLFGGL AGNTGTGATG GLGGLGSADL GSLLGGSPDS
401: SSLSQILQNP VMMQMMQNIM SDPQSMNQLL NFNPNTRNLM ESNTQLREMF QNPEFIRQLT SPETMQQLLS FQQTLLSQLG QNQPRQDGSQ GGNATGMRGN
501: VSLDTLMGML SGLGAGGGIG VPNTSNVPPE ELYATQLTQL REMGFIDTAE NIQALVATAG NVNAAVERLL GNLGQ
101: GAGPPAGSAA PAAASPQASA APSSGPTDGL GSLFPGLGGT GTAGTRPSGL FGSGFPELDQ MQQQLSQNPN LMREIMNMPM MQNLMNNPDL IRNMIMNNPQ
201: MRDIIDRNPD LAHVLNDPSV LRQTLEAARN PEIMREMMRN TDRAMSNIES SPEGFNMLRR MYETVQEPFL NATTMGGEGN TAPNPFSALL GNQGSNQPRD
301: PATNAPNTGS ESTTGTPAPN TNPLPNPWSS NAGGAQGATR AGSTGNARTG ATGGLGGLGS ADLSSLFGGL AGNTGTGATG GLGGLGSADL GSLLGGSPDS
401: SSLSQILQNP VMMQMMQNIM SDPQSMNQLL NFNPNTRNLM ESNTQLREMF QNPEFIRQLT SPETMQQLLS FQQTLLSQLG QNQPRQDGSQ GGNATGMRGN
501: VSLDTLMGML SGLGAGGGIG VPNTSNVPPE ELYATQLTQL REMGFIDTAE NIQALVATAG NVNAAVERLL GNLGQ
001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q
Arabidopsis Description
DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.