Factsheet for PGSC0003DMT400048093

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07807	Soybean	cytosol, mitochondrion, nucleus	44.44	53.73
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	64.2	11.43
Solyc03g032160.2.1	Tomato	plastid	66.67	9.69
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	59.26	9.3
GSMUA_Achr5P11110_001	Banana	cytosol	60.49	9.19
Os03t0131300-01	Rice	plasma membrane	59.26	8.99
Zm00001d027514_P002	Maize	cytosol	59.26	8.96
EER92919	Sorghum	cytosol	59.26	8.92
PGSC0003DMT400003987	Potato	cytosol	60.49	8.88
KRH28904	Soybean	cytosol	59.26	8.87
KRH76549	Soybean	cytosol	59.26	8.87
TraesCS4B01G325900.2	Wheat	cytosol	58.02	8.83
KRH07920	Soybean	cytosol	58.02	8.69
Zm00001d048343_P001	Maize	cytosol	56.79	8.63
HORVU4Hr1G082050.15	Barley	cytosol	56.79	8.61
TraesCS1D01G206500.1	Wheat	cytosol	59.26	8.51
Zm00001d047373_P001	Maize	cytosol	60.49	8.51
TraesCS1A01G203000.1	Wheat	cytosol	59.26	8.45
TraesCS1B01G217000.1	Wheat	cytosol	59.26	8.45
EER92003	Sorghum	cytosol	60.49	8.45
KRH69678	Soybean	nucleus	56.79	8.44
TraesCS4D01G322800.1	Wheat	cytosol	58.02	8.27
TraesCS5A01G498100.1	Wheat	cytosol	58.02	8.27
Zm00001d029782_P004	Maize	cytosol	60.49	8.26
GSMUA_Achr7P04060_001	Banana	cytosol	54.32	8.07
Os10t0542200-01	Rice	plasma membrane, plastid	55.56	7.83
GSMUA_Achr1P14990_001	Banana	cytosol	53.09	7.76
GSMUA_Achr3P00530_001	Banana	cytosol	51.85	7.59
HORVU1Hr1G052260.2	Barley	cytosol	38.27	5.43
GSMUA_Achr1P02760_001	Banana	cytosol	4.94	3.1
PGSC0003DMT400045106	Potato	cytosol	17.28	3.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400048093	EnsemblPlantsGene:PGSC0003DMG400018686	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015940	InterPro:UBA	InterPro:UBA-like_sf	InterPro:Ubiquilin	PANTHER:PTHR10677	PANTHER:PTHR10677:SF39
PFAM:PF00627	PFscan:PS50030	PGSC:PGSC0003DMG400018686	SEG:seg	SignalP:SignalP-noTM	SMART:SM00165
SUPFAM:SSF46934	UniParc:UPI000294F9E6	UniProt:M1BLY6	MapMan:35.2	:	:

Description

Ubiquitin protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018686]

Coordinates

chr3:-:3159055..3160231

Molecular Weight (calculated)

8835.7 Da

IEP (calculated)

4.218

GRAVY (calculated)

0.499

Length

81 amino acids

Sequence
(BLAST)

1: MVTFISCFLS SVFLSLSLRL NDFSISLLIS VAVPPEELYA TQLTQLQEMG FFDTQENIRA LTASGGNVHA AVERLLGNLG Q

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.