Factsheet for TraesCS4D01G322800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G071300.2
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS4B01G227200.2
TraesCS4D01G227900.2
TraesCS5B01G340700.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7A01G303900.1
TraesCS7B01G204300.2
TraesCS7D01G056400.1
TraesCS7D01G299400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17190.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17190.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7A01G303900.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS7B01G204300.2	AT1G79810.1	23336935
AT2G17200.1	TraesCS7D01G299400.1	AT1G79810.1	23336935
AT2G17200.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G17200.1	TraesCS4A01G071300.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4B01G227200.2	AT4G38630.1	20059542
AT2G17200.1	TraesCS4D01G227900.2	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G498100.1	Wheat	cytosol	97.18	97.18
TraesCS4B01G325900.2	Wheat	cytosol	87.32	93.23
HORVU4Hr1G082050.15	Barley	cytosol	81.69	86.89
Os03t0131300-01	Rice	plasma membrane	70.25	74.72
EER92919	Sorghum	cytosol	70.07	73.98
Zm00001d027514_P002	Maize	cytosol	69.37	73.51
Zm00001d048343_P001	Maize	cytosol	68.13	72.61
TraesCS1D01G206500.1	Wheat	cytosol	62.85	63.3
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.39	62.69
GSMUA_Achr5P11110_001	Banana	cytosol	55.63	59.29
PGSC0003DMT400048093	Potato	extracellular	8.27	58.02
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	45.95	57.36
AT2G17190.1	Thale cress	cytosol	54.23	57.25
CDX88001	Canola	cytosol	54.4	57.01
KRH76549	Soybean	cytosol	54.23	56.93
CDY07870	Canola	cytosol	53.7	56.69
PGSC0003DMT400003987	Potato	cytosol	54.93	56.52
CDY26796	Canola	cytosol	52.29	56.14
KRH07920	Soybean	cytosol	53.17	55.82
CDY31374	Canola	cytosol, plastid	52.64	55.78
AT2G17200.1	Thale cress	cytosol	54.05	55.72
Solyc03g032160.2.1	Tomato	plastid	54.4	55.48
Bra009657.1-P	Field mustard	cytosol	53.87	55.43
Solyc02g082800.2.1	Tomato	plastid	53.87	55.33
CDX71349	Canola	cytosol	53.17	55.11
Bra002028.1-P	Field mustard	cytosol, plastid	53.35	55.09
KRH28904	Soybean	cytosol	52.46	55.08
VIT_03s0038g03680.t01	Wine grape	cytosol	55.99	54.83
KRH69678	Soybean	nucleus	52.46	54.68
CDY47488	Canola	cytosol	50.18	54.29
Bra037281.1-P	Field mustard	cytosol	51.41	53.87
CDX75489	Canola	cytosol	48.59	53.49
Bra011602.1-P	Field mustard	cytosol	42.78	53.17
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	45.07	49.61
Solyc02g060600.1.1	Tomato	cytosol	22.01	44.48
PGSC0003DMT400045106	Potato	cytosol	35.92	43.97
Solyc02g060580.1.1	Tomato	cytosol	23.06	42.81
Solyc02g061720.1.1	Tomato	cytosol	24.65	41.42
Solyc02g061670.1.1	Tomato	cytosol	25.35	41.03
Solyc02g061710.1.1	Tomato	nucleus	16.37	37.96
Solyc02g061680.1.1	Tomato	cytosol	31.87	37.47
Solyc02g061610.1.1	Tomato	cytosol	32.75	37.35
Solyc02g060590.1.1	Tomato	cytosol	8.45	35.82
Solyc02g061640.1.1	Tomato	cytosol	8.1	34.33
CDX69126	Canola	nucleus	41.9	33.01
GSMUA_Achr1P02760_001	Banana	cytosol	6.87	30.23
Solyc02g060570.1.1	Tomato	cytosol	34.51	27.64

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10677	PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	EnsemblPlantsGene:TraesCS4D01G322800	EnsemblPlants:TraesCS4D01G322800.1	InterPro:UBA	InterPro:UBA-like_sf
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	TIGR:cd01769	TIGR:cd14399	SEG:seg

Description

No Description!

Coordinates

chr4D:-:484662048..484666686

Molecular Weight (calculated)

60273.2 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.429

Length

568 amino acids

Sequence
(BLAST)

001: MDKLTHTTDN TTQTPPLSHS TGRIWAEAGR IDPWARGMGG GEGEVGSEPA GEASDVAVLV AFYIRDTRGN DFSVWADLGD TVGEFKVDFA RTCNVPARRQ
101: RLIYKGRILK DDQTLASYGV EADHTIHMVR GAAPPPTSAA PAAANLGTST TTPANTPPAG LGGLFQGLGS TGTAGSGAFG LSGSGLPGLE QMQQQLTENP
201: NLMREVLNTP AMQNIMNSPD LIRDLIMNNP QMRELVDRNP DLAHVLNDPS ILRQTVEAAR NPELMREMMR NTDRAMSNIE SSPEGFNMLR RMYETVQEPF
301: MNATTMAGEG NTNPNPFAAL LGDQGSNQAR DPTGDAPTTA PAPNTNPLPN PWGANAGAAQ GAARPSAAAR SATSGGLGGL GSADLGSMLG GGSDASLLNQ
401: VIQNPAMMQM MQNIMSNPQT MNQLLNMNPN VRNMMESNTQ MREMFQNPEF LRQLTSPETL QQLASFQQAL TSQLGQQAAG QERTQAGTTP GNVNLNSLMS
501: MFSGLGAGGG LGGVPNIPTV PPEERYATQL AQLQEMGFFD PQENIRALLA TNGNVHAAVE RLLGNFGQ

Best Arabidopsis Sequence Match ( AT2G17190.1 )
(BLAST)

001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ

Arabidopsis Description

DSK2AUbiquitin domain-containing protein DSK2a [Source:UniProtKB/Swiss-Prot;Acc:Q9SII9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.