CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011602.1-P	Field mustard	cytosol	47.3	74.62
CDX75489	Canola	cytosol	51.46	71.9
CDY26796	Canola	cytosol	42.3	57.66
CDX88001	Canola	cytosol	43.27	57.56
CDY47488	Canola	cytosol	41.89	57.52
CDY31374	Canola	cytosol, plastid	42.72	57.46
CDX71349	Canola	cytosol	43.41	57.12
CDY07870	Canola	cytosol	42.58	57.06
VIT_03s0038g03680.t01	Wine grape	cytosol	39.11	48.62
GSMUA_Achr5P11110_001	Banana	cytosol	34.12	46.15
TraesCS4B01G325900.2	Wheat	cytosol	33.56	45.49
EER92919	Sorghum	cytosol	33.84	45.35
HORVU4Hr1G082050.15	Barley	cytosol	33.56	45.32
Zm00001d027514_P002	Maize	cytosol	33.56	45.15
Os03t0131300-01	Rice	plasma membrane	33.15	44.76
Zm00001d048343_P001	Maize	cytosol	32.73	44.28
TraesCS1D01G206500.1	Wheat	cytosol	34.26	43.79
GSMUA_Achr1P14990_001	Banana	cytosol	33.43	43.5
TraesCS1B01G217000.1	Wheat	cytosol	34.12	43.31
TraesCS1A01G203000.1	Wheat	cytosol	33.98	43.13
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	27.18	43.08
EER92003	Sorghum	cytosol	34.54	42.93
GSMUA_Achr3P00530_001	Banana	cytosol	32.73	42.68
Os10t0542200-01	Rice	plasma membrane, plastid	33.98	42.61
GSMUA_Achr7P04060_001	Banana	cytosol	32.18	42.57
TraesCS5A01G498100.1	Wheat	cytosol	33.15	42.08
TraesCS4D01G322800.1	Wheat	cytosol	33.01	41.9
Zm00001d047373_P001	Maize	cytosol	33.29	41.67
Zm00001d029782_P004	Maize	cytosol	33.84	41.15
HORVU1Hr1G052260.2	Barley	cytosol	32.32	40.81
GSMUA_Achr1P02760_001	Banana	cytosol	5.83	32.56

Protein Annotations

Gene3D:1.10.8.10	MapMan:15.5.15	MapMan:19.3.4.6	Gene3D:3.10.20.90	GO:A0A078BWD5	EnsemblPlants:CDX69126
ProteinID:CDX69126	ProteinID:CDX69126.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00130912001	InterPro:IPR000626	InterPro:IPR013087	InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627
PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50030	PFscan:PS50053	PFscan:PS50157	PANTHER:PTHR10677
PANTHER:PTHR10677:SF38	SMART:SM00165	SMART:SM00213	SMART:SM00355	SMART:SM00727	SUPFAM:SSF46934
SUPFAM:SSF54236	SUPFAM:SSF57667	InterPro:STI1_HS-bd	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EECFC6
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

BnaC01g03270D

Coordinates

chrLK031789:-:3067949..3071495

Molecular Weight (calculated)

78723.4 Da

IEP (calculated)

7.316

GRAVY (calculated)

-0.512

Length

721 amino acids

Sequence
(BLAST)

001: MVGEVDSNGP QTVVDGGGGE VVPVNVRCTN GSKFIVRTSL ESTVESFKAL VAQNCDVPAN QQRLIYKGRI LKDDHTLLSY GLQADHALHM VRGSAPPGSQ
101: TTAPSVTRGV ASNTGGESLF GYNPLASGLF GAAGLPDLEQ AQQQLAQNPN MVQDMMNAPA IQNIMNNPEL MRTLIMSNPQ MRELVDRNPE LGHILNDPSV
201: LRQSLEAARN PELMREMTRS TDRAMSNIEA TPEGFNMLRR MYENVQEPLM NATTMSGNAG NNVDASNSLM TTNAETGTGN DVPNTNPLPN PWGAAGGQTT
301: TSGRTNSGGD TRAPGLGGLG MLGGDPMVGA TPDIMSLNPQ LQSLMDSSPQ VREMMQNPEF LRMLSSPETM QQMMSLQQSL LSGNRSTTTV PPEELYATQL
401: QQLEEMGFFD RADNIRALRA TNGNVNAAVE RLLGSIGHYF FYVITMIHNQ LPPTSNAIIP IFTNPNLQLA LSPSYHESPR KKRTRTVAST SSPSPKKTKY
501: TKPDPNTPKI TRPCTECGKT FWSWKALFGH MRCHPERQWR GINPPPNHRG PTRTLSSSKH LNQRFSLMSE EDYEVASYLL MLSEAKPLSP SSSGERFECG
601: GCKKVFGSHQ ALGGHRASHK NVKGCFAITN VTGDDPVTVT SNQDHHQGKT VTFSEHHKCS NICFRVYSNG QALRGHMRYH CWERERETVL VGALDLNVPV
701: TTHDLSSSDT SGCSLDLRLG L

Best Arabidopsis Sequence Match ( AT4G35280.1 )
(BLAST)

001: MNNNHSYDDR SFHIPLHPSN TSNPNPNLQF ALSSSYDHSP KKKRTKTVAS SSSSSPKSAS KPKYTKKPDP NAPKITRPCT ECGRKFWSWK ALFGHMRCHP
101: ERQWRGINPP PNYRVPTAAS SKQLNQILPN WVSFMSEEDH EVASCLLMLS NGTPSSSSIE RFECGGCKKV FGSHQALGGH RASHKNVKGC FAITNVTDDP
201: MTVSTSSGHD HQGKILTFSG HHKCNICFRV FSSGQALGGH MRCHWEKEEE PMISGALDLN VPPTIQDLST SDTSGCCLDL RLGL

Arabidopsis Description

ZAT3DAZ2 [Source:UniProtKB/TrEMBL;Acc:A0A178UTT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.