CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92569
EES06648
EES16336
KXG24014
KXG33416

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	EES16336	AT1G79810.1	23336935
AT2G17190.1	KXG24014	AT1G79810.1	23336935
AT2G17200.1	EES16336	AT1G79810.1	23336935
AT2G17200.1	KXG24014	AT1G79810.1	23336935
AT2G17200.1	EES06648	AT3G16120.1	21798944
AT2G17200.1	KXG33416	AT3G16120.1	21798944
AT2G17200.1	EER92569	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029782_P004	Maize	cytosol	89.66	87.69
Os10t0542200-01	Rice	plasma membrane, plastid	80.86	81.57
TraesCS1D01G206500.1	Wheat	cytosol	76.72	78.9
TraesCS1B01G217000.1	Wheat	cytosol	77.24	78.87
TraesCS1A01G203000.1	Wheat	cytosol	76.38	77.99
HORVU1Hr1G052260.2	Barley	cytosol	74.14	75.31
EER92919	Sorghum	cytosol	66.38	71.56
GSMUA_Achr5P11110_001	Banana	cytosol	58.28	63.41
KRH07807	Soybean	cytosol, mitochondrion, nucleus	7.07	61.19
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	47.93	61.1
PGSC0003DMT400048093	Potato	extracellular	8.45	60.49
PGSC0003DMT400003987	Potato	cytosol	56.72	59.6
Solyc02g082800.2.1	Tomato	plastid	56.72	59.49
Solyc03g032160.2.1	Tomato	plastid	55.86	58.17
KRH76549	Soybean	cytosol	54.14	58.04
KRH28904	Soybean	cytosol	53.62	57.49
KRH07920	Soybean	cytosol	52.76	56.56
CDY26796	Canola	cytosol	51.55	56.52
CDX88001	Canola	cytosol	52.76	56.46
VIT_03s0038g03680.t01	Wine grape	cytosol	56.03	56.03
CDX75489	Canola	cytosol	49.83	56.01
Bra009657.1-P	Field mustard	cytosol	53.1	55.8
CDY07870	Canola	cytosol	51.72	55.76
Bra037281.1-P	Field mustard	cytosol	52.07	55.72
Bra002028.1-P	Field mustard	cytosol, plastid	52.76	55.64
CDY47488	Canola	cytosol	50.34	55.62
CDY31374	Canola	cytosol, plastid	51.38	55.6
KRH69678	Soybean	nucleus	52.24	55.6
CDX71349	Canola	cytosol	52.24	55.29
AT2G17190.1	Thale cress	cytosol	51.21	55.2
AT2G17200.1	Thale cress	cytosol	52.41	55.17
Bra011602.1-P	Field mustard	cytosol	43.45	55.14
VIT_04s0210g00220.t01	Wine grape	cytosol, nucleus	45.69	51.36
PGSC0003DMT400045106	Potato	cytosol	36.72	45.91
Solyc02g060600.1.1	Tomato	cytosol	21.9	45.2
Solyc02g060580.1.1	Tomato	cytosol	22.24	42.16
Solyc02g061720.1.1	Tomato	cytosol	24.48	42.01
Solyc02g061670.1.1	Tomato	cytosol	25.34	41.88
Solyc02g061680.1.1	Tomato	cytosol	32.59	39.13
GSMUA_Achr1P02760_001	Banana	cytosol	8.62	38.76
Solyc02g060590.1.1	Tomato	cytosol	8.79	38.06
Solyc02g061610.1.1	Tomato	cytosol	32.07	37.35
Solyc02g061710.1.1	Tomato	nucleus	15.69	37.14
Solyc02g061640.1.1	Tomato	cytosol	8.45	36.57
CDX69126	Canola	nucleus	42.93	34.54
Solyc02g060570.1.1	Tomato	cytosol	33.79	27.64

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EntrezGene:8058802	UniProt:C5WTK1	EnsemblPlants:EER92003
ProteinID:EER92003	ProteinID:EER92003.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
InterPro:IPR015940	PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677
PANTHER:PTHR10677:SF28	SMART:SM00165	SMART:SM00213	SMART:SM00727	EnsemblPlantsGene:SORBI_3001G311100	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	unigene:Sbi.8036	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0001A825A7
InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_002465005.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:59815900..59820935

Molecular Weight (calculated)

59706.5 Da

IEP (calculated)

4.443

GRAVY (calculated)

-0.336

Length

580 amino acids

Sequence
(BLAST)

001: MASGGEGAGS GESPPAASVE AAAGEATLHI RCANGSKFTV QTDLGATVGA FKEVVAGSCD VPAPQQRLIY KGRILKDEQT LESYGVETDH TIHLVRGVAP
101: PAASSAPAAA SPLASSTPSS GPAGGLGGLF PGLGAPASGR PSGIFGPGFP ELEQVEQHLS QNPNLMREIM NMPAMQNLMN NPDLIRNMIM SNPQMREIMD
201: RNPDLAHVLN DPSVLRQTLE AARNPEIMRE MMRNTDRAMS NIESSPEGFN MLRRMYETVQ EPLLNATTMG GEGNTASNPF SALLGNQGSN QPGQGQPATN
301: APATGSESTT GTPAPNTNPL PNPWSTNAGS AQGATRSSPS GNARTGASGG VAGTGATGGL GGLGSPDLSS LLGGLAGNPR TGAAGGLGGL GSPDLGNMLG
401: GSPDVSLFNQ MLQNPAMMQM MQSIMSDPQT MNQLLNFNPN TRNLMESNTQ MREMLQNPEF LRQLTSPDTL QQLLSFQQSL LGQLGQLQPS QGGNNAGSAT
501: GTQGNPSLDT LMSMLSGLGS GGGLGVPNTS NVPPEELYAT QLTQLQEMGF IDTAENIQAL VATAGNVHAA VERLLGNLGQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.