Factsheet for Bra037281.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003533.1-P
Bra010735.1-P
Bra027190.1-P
Bra033573.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17190.1	Bra003533.1-P	AT1G79810.1	23336935
AT2G17200.1	Bra003533.1-P	AT1G79810.1	23336935
AT2G17200.1	Bra027190.1-P	AT3G16120.1	21798944
AT2G17200.1	Bra010735.1-P	AT4G38630.1	20059542
AT2G17200.1	Bra033573.1-P	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47488	Canola	cytosol	94.83	97.9
Bra009657.1-P	Field mustard	cytosol	82.1	80.62
Bra002028.1-P	Field mustard	cytosol, plastid	81.0	79.82
AT2G17200.1	Thale cress	cytosol	78.23	76.95
AT2G17190.1	Thale cress	cytosol	76.01	76.58
Bra011602.1-P	Field mustard	cytosol	55.54	65.86
VIT_03s0038g03680.t01	Wine grape	cytosol	62.55	58.45
GSMUA_Achr5P11110_001	Banana	cytosol	55.17	56.1
TraesCS4B01G325900.2	Wheat	cytosol	53.69	54.7
HORVU4Hr1G082050.15	Barley	cytosol	53.87	54.68
Zm00001d027514_P002	Maize	cytosol	53.32	53.92
EER92919	Sorghum	cytosol	53.51	53.9
TraesCS1D01G206500.1	Wheat	cytosol	55.9	53.72
TraesCS1B01G217000.1	Wheat	cytosol	56.09	53.52
TraesCS1A01G203000.1	Wheat	cytosol	56.09	53.52
Zm00001d048343_P001	Maize	cytosol	52.58	53.47
GSMUA_Achr1P14990_001	Banana	cytosol	54.61	53.43
GSMUA_Achr1P02770_001	Banana	extracellular, plasma membrane, vacuole	44.28	52.75
Os10t0542200-01	Rice	plasma membrane, plastid	55.9	52.7
GSMUA_Achr3P00530_001	Banana	cytosol	53.69	52.62
Os03t0131300-01	Rice	plasma membrane	51.66	52.43
EER92003	Sorghum	cytosol	55.72	52.07
TraesCS4D01G322800.1	Wheat	cytosol	53.87	51.41
TraesCS5A01G498100.1	Wheat	cytosol	53.87	51.41
Zm00001d047373_P001	Maize	cytosol	54.06	50.87
GSMUA_Achr7P04060_001	Banana	cytosol	50.92	50.64
HORVU1Hr1G052260.2	Barley	cytosol	52.95	50.26
Zm00001d029782_P004	Maize	cytosol	54.06	49.41
GSMUA_Achr1P02760_001	Banana	cytosol	9.04	37.98

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.6	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra037281	EnsemblPlants:Bra037281.1	EnsemblPlants:Bra037281.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR015940	UniProt:M4F870
PFAM:PF00240	PFAM:PF00627	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10677	PANTHER:PTHR10677:SF38
SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0002541DF2	InterPro:Ubiquilin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

AT2G17200 (E=4e-207) | ubiquitin family protein

Coordinates

chrA09:-:4560095..4562858

Molecular Weight (calculated)

57186.5 Da

IEP (calculated)

4.443

GRAVY (calculated)

-0.472

Length

542 amino acids

Sequence
(BLAST)

001: MGGEGDSSKP LTADDGGEGE GRALVAVNVR CSNGSKFNVS TSLDSTVEAF KELVAQNSDV PANQQRLIYK GRILKDDQTL LSYGLQADHT VHMVRGFAPS
101: SAPPPSAPVN QTTDNTSNLG ESLFGFNPLG GGSLFGAPPD LEQAQQQLAQ NPNMVRDMMN SPAIQNLMNN PEFMRSIIMS NPQMRDLVDR NPELGHVLND
201: PSILRQTLEA ARNPELMREM MRNTDRAMSN IESMPEGFNH LRRMYENVQE PLMNATTMSG NAGSNAASNP FAALLGNQGV TTTTQGSDGS TNAETGTGNG
301: IPNANPLPNP WGATAGQTNA PGRTNPGGDA RSPGLGGLGG LGGLGGLGGL GGLGMLGADS PLGATPDASQ LNQMLQNPAM SQMMQSMLSN PQYVNQLINL
401: NPQLRSMLDS HPQLREMMQN PDLLRQFSSP EMMQQMMSLQ QLLSSQNRNT TSQEPGQTGA AAAGAGNNGG MDLLMNLFGS LGAGGLSGTN QSSVPPEERF
501: ATQLQQLQEM GFYDSAENIR ALLATNGNVN AAVERLLGSI GQ

Best Arabidopsis Sequence Match ( AT2G17200.1 )
(BLAST)

001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q

Arabidopsis Description

DSK2BUbiquitin domain-containing protein DSK2b [Source:UniProtKB/Swiss-Prot;Acc:Q9SII8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.